LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu9g00458	ATGTTAATGAGTTATAAGCCTAAGATGTCACTATGTTCGTGCAGAAACTTCCCAACTCCTTTTCTTTGGTTTCCATTGTTGCTGGTTCTGCTGAGCAATGCTTCAGCTGATGCATCCTTGAAGCCAAAGAATCCATGGTATACAGCTACACAAAGAGCTTTAATGCATTTGCTGCTAAATTGTCCGAGAATGAAGCTAGGAACTTATCTGGCATGTGGTCATTTTTCTCTAGTTCATTCATGTTATTTGTCAATTAGTGAGTACTTTTACTCATTTTTTTTACTTTCTTGTTTGCTATATTTAGCCATGGATGAAGTAGTTTCTGTTATTCCAAATCAGTACCGCAAGCTACACACAACAAGATCATGGGACTTCATAGGATTACCTTTGACTGCTAAGAGAAAACTGAAATCAGAAAGTGACATAATTGTGGCTCTTTTGGATACAGGGGTCACTCCTCAGCTTCAAAGCTTCATGGACGATGGATTTGGTCCTCCACCTGCTAAATGGAAAGGAACTTGTGATAAATATGCAAATTTTTCAGGCTGCAATAACAAGCTGATAGGAGCCAGATATTTCAAGATTGGTGGAAGGCCTGATCCATCTGACATATTATCCCCCATAGATGTGGTTGGCCATGGAACTCATACTGCATCAACAGCAGCAGGAACTGTTGTACCAGATGCAAGTCTTTTTGGCATAGCCAAAGGCACAGCTCGTGGTGCTGTGCCATCAGCCAGATTGGCAGTTTACAAAGTCTGCTGGGCGAGTGATGATTGTGCAGACATGGACATACTTGCAGCATTTGAAGCTGCTATACATGATGGTGTTGATGTCATATCCATTTCCATTGGTGGAGGGAATCCAAATTATGTGCAGGACTCTATAGGAATTGGATCATTTCATGCCATGAGGAAAGGCATAATCACTGTGGCCTCAGCTGGAAATGATGGACCATTCATGGCAACTGTCACAAATACTGCACCATGGATTGTAACAGTGGCTGCTAGTGGCATTGATAGGGATTTCAGGAGCACTATTCAGTTGGGAAATGGAAAGAATTTTTCTGGGGGAGGGCTGACCACCTTCAATCCAAAACAAAAACAGTACCCCCTTGTCAATGGGACTGATGCAGCCAGAAACTCTGGAAGCAAGGAAAGTGCTAGGTTCTGCTATGAAGACTCCTTGGATCCAACTAAGGTGAAAGGAAAACTTGTATACTGTAGTTTAAGTGGCTGGGGCAGTGAATCTGTTGTGAAAGGAATTGGTGGCATTGGTACTATAATGGAAAGTGACCAAGTTTTTGAAATTGCCCAAATATTCATGGCTCCAGCTACCATAGTGAATAGTAGCATAGGACAAATTATTATCAATTATACACACTCCACAAGGTATGATAAGATTCTCTTCATTGCTCTCTCCGTATTTGCATCTTATACACCTATGAGGTCAATTACTGGAGAGAAAGGAGATACCCAGTTTTCAGAATTTACACTTATGTCTGGAACTTCTATGGCATGCCCTCATGTTTCTGGTGTAGCAGCATATGTGAAATCTTTTCACCCCAATTGGTCTCCTGCTGCAATAAGATCAGCCATTATTACCACAGCTAAACCTATGAGCCAGAGAATTAACAAGGAGGCAGAATTTGCCTATGGTGCTGGTCAAGTGAACCCTACAAGAGCTGTGAACCCTGGTTTAGTCTATGACATGGATGACTTTGCATATGTTCAGTTCTTATGCCATGAGGGCTATAATGGTTCCACTCTATCAGTGTTAGTTGGCTCTCCTGTGAACTGCACCTCTTTGCTTCCAGGACTTGGCCATGATGCTCTCAACTACCCCACCATGCAACTAAGTGTGGAAAACAACTCAGGCACAACAGTAGGAGTTTTCAGGAGAAGAGTGACCAATGTTGGTCCTGCTCCAACCATCTTCAATGCCACCATCAAATCTCCCAAAGGAGTGGAAATCACAGTGAAACCTGAAAGCCTCATTTTCTCTCATACTCTGCAGAAGAAGAGCTTCAAGGTAGTGGTGAAAGCAAAATCTATGGCAAGCATGAAAATAGTATCAGGTTCTCTTATTTGGAGAAGCACACGTTACATTGTTAGGAGTCCTATTGTTATCTATAGTCCATAA	2142	0.4206	MLMSYKPKMSLCSCRNFPTPFLWFPLLLVLLSNASADASLKPKNPWYTATQRALMHLLLNCPRMKLGTYLACGHFSLVHSCYLSISEYFYSFFLLSCLLYLAMDEVVSVIPNQYRKLHTTRSWDFIGLPLTAKRKLKSESDIIVALLDTGVTPQLQSFMDDGFGPPPAKWKGTCDKYANFSGCNNKLIGARYFKIGGRPDPSDILSPIDVVGHGTHTASTAAGTVVPDASLFGIAKGTARGAVPSARLAVYKVCWASDDCADMDILAAFEAAIHDGVDVISISIGGGNPNYVQDSIGIGSFHAMRKGIITVASAGNDGPFMATVTNTAPWIVTVAASGIDRDFRSTIQLGNGKNFSGGGLTTFNPKQKQYPLVNGTDAARNSGSKESARFCYEDSLDPTKVKGKLVYCSLSGWGSESVVKGIGGIGTIMESDQVFEIAQIFMAPATIVNSSIGQIIINYTHSTRYDKILFIALSVFASYTPMRSITGEKGDTQFSEFTLMSGTSMACPHVSGVAAYVKSFHPNWSPAAIRSAIITTAKPMSQRINKEAEFAYGAGQVNPTRAVNPGLVYDMDDFAYVQFLCHEGYNGSTLSVLVGSPVNCTSLLPGLGHDALNYPTMQLSVENNSGTTVGVFRRRVTNVGPAPTIFNATIKSPKGVEITVKPESLIFSHTLQKKSFKVVVKAKSMASMKIVSGSLIWRSTRYIVRSPIVIYSP	713

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu9g00458	713	Pfam	Subtilase family	140	555	IPR000209	GO:0006508\|GO:0008236
	Vimu9g00458	713	Gene3D	-	580	712	-	-
	Vimu9g00458	713	ProSitePatterns	Serine proteases, subtilase family, serine active site.	502	512	IPR023828	-
	Vimu9g00458	713	SUPERFAMILY	Subtilisin-like	125	567	IPR036852	GO:0004252\|GO:0006508
	Vimu9g00458	713	Gene3D	-	340	466	-	-
	Vimu9g00458	713	Pfam	Fibronectin type-III domain	612	710	IPR041469	-
	Vimu9g00458	713	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	102	470	IPR045051	-
	Vimu9g00458	713	Gene3D	Peptidase S8/S53 domain	474	573	IPR036852	GO:0004252\|GO:0006508
	Vimu9g00458	713	Gene3D	Peptidase S8/S53 domain	141	339	IPR036852	GO:0004252\|GO:0006508
	Vimu9g00458	713	ProSiteProfiles	Serine proteases, subtilase domain profile.	122	563	-	-
	Vimu9g00458	713	CDD	Peptidases_S8_3	116	537	IPR034197	-
	Vimu9g00458	713	PRINTS	Subtilisin serine protease family (S8) signature	209	222	IPR015500	-
	Vimu9g00458	713	PRINTS	Subtilisin serine protease family (S8) signature	501	517	IPR015500	-
	Vimu9g00458	713	PRINTS	Subtilisin serine protease family (S8) signature	139	158	IPR015500	-
	Vimu9g00458	713	CDD	PA_subtilisin_like	346	464	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu9g00458	Vimu-Chr9	5424264	5428970	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu9g00458	101	551	Subtilisin-like Serine Gene Family	AT4G00230	60.082	0.0	578

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu9g00458	-		-	ccaj:109800351	1069.68