Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00456 ATGGCTACTACAAATTCATCGACTCAGTTTGCAAAAATCTCCAACAACTTTTTCATGGCTTCTTCTTCATCTTCATCTTCACCAACCTTCATGGCCATTCTCCTCCTCCTCTTGTACTTCCACTCTTCGGCGGCGCTCCCCCTCTCCGTGGAGAGACTCGACGAAGACGTGATAATTTCAAAGCCGAAGGGGACGTTCACGGCCGGGTTCAGGAACGTGGGGGAGAACGCGTACTGCTTCGGCGTGTGGTTCTCGCAGGCGGAGAAGCACGTGGTGTGGATGGCCAACCGCGACCTTCCGGTGAACGGGAAACGCTCCTCGCTGTCTCTCCTCAAGAACGGCAACCTCGTGTTGTCTGACGCCGGACAGTTCGACGTTTGGAACACCCAGACTCTGTCAGAGAAGCCGTTGGAGTTGCATTTGCACGACACCGGGAACCTCGTGCTCCGGGAACAGACCAATAGAAGCTCTGTTTTGTGGGAAAGCTTTAATTTTCCCACTGATACACTCCTCCCTGGCCAGCTTCTCACCAGGTTCACGAAGCTTGTCTCTGCTAGAAGTGAGGGCAACTATTCCTCTGGGTTTTACAAGCTCTTCTTCGACAACGACAACGTTTTCCGTCTTCTGTACGAGGGTCGTGAAGTTTCAAGCGTTTACTGGCCGGATCCTTGGCTGGTTAGCAACAACGTTGGGTCGGGTAACGGAAGAACCTCGTACAATAGTAGCAGAGTTGCAGTTCTAGATGACTTGGGCCTATTCAGTGTTTCTGATAAATATAGTTTAACGACAATTGATTATGGGTTACTCCTTCAACGAAGGTTGACCCTTGACTATGATGGCAATGTTCGTATCTATAGCAGAGAAAATGGTCAAGAAGATTGGTCCATAGCAGGGCAATTCAAATCACAACCTTGTTTCATTCATGGGATCTGTGGACCTAACAGTATATGCAGTCATGATAAAGCAATTGGTAGAAAGTGTGAGTGTCTTGAAGGGTATAGCTGGGTTGATAGCGAAGATTGGTCTTTGGGTTGCACACCAAATTTCAAAACTACCTGTGATAACAAGACAGAATATCGCGTAGTGCCCCTCTATGAAGTGGATTTTTATGGATATGACTACGGAACTTCCTTTGAAAATTACACGTATAAACAATGTGAGAAACTGTGCTTGGACGTGTGCGAGTGCATGGGCTTTCAGTACAGCTTTGCTGCAGAGAATGGGCACTTTTGGTGTTACCCAAAGACGCAGTTGCTAAATGGACACCATTCACCCGGTTTCACAGGAAATTTTTTCGTGCGTCTGCCAAAAGAAAGTGCTCAAGAGAACCACCTGCAAAACAATGATGGCTTGGTTTGTCCGAGAAATGCAGAAATACTACTAGAAAGACCATATGTGAAAGGCAAGGAAAATGGGTCTGTGAAGTTCATGCTTTGGTTTGCAGTTGGCTTAGGAGGGTTTGAGGCGGTGTGCATCTTTATGGTGTGGTGTTTCTTGTTTAGGAGTAGCGACCATTTGGTTAGGGCAGACCAACAAGGGTATGTTCTTGCTGCAGCTACAGGGTTCAGAAGGTACACATACTCTGAACTGAAACAAGCCACAAAGGGTTTCAGTGAAGAGATCGGAAGGGGTGCAGGAGGGACAGTATACAAGGGTGTGTTATCAGATAACCGAGTTGCAGCAATAAAAAAGCTGCACGAATTTGCGGACCAAGGAGAGAGTGAGTTCCTCACTGAAATGAGCATCATTGGAAGGCTGAATCACATGAACTTAATCGGCATGTGGGGGTATTGTGTGGAAGGAAAACACAGGATCCTGGTTTATGAGTACATGGAAAACGGCTCTTTGGCTAATAATCTTCCATCAAATTCACTTGATTGGAGGAAGAGGTACAACATTGCAATGGGAATGGCAAAGGGTTTGGCCTATTTACATGAAGAGTGCTTGGAGTGGATCTTGCACTGTGATATCAAGCCTCAAAACATACTTCTTGACTCTGATTACCAACCCAAGGTGGCTGATTTTGGCTTGTCCAAGCCCTTGAACAGAAACAACCTCAACAACTCAAGCTTCTCTAGAATAAGAGGCACAAGGGGTTACATGGCACCAGAATGGGTTTTCAACTTGCAAATCACTTCCAAGGTTGATGTTTATAGCTATGGGATTGTTGTGTTGGAGATGATAACTGGGAGGAGTCCAATGATTGGTGTCCAAGTCACAGAACCAGGGCAAGAGTCGCATAATGAGAGGTTGGCAACATGGGTGAGGGAGAAAAGAAGGAAAACACCAGAAGGAACATCTTGGGTGGAACAAATTGTTGACCCCACTTTAGGATCAGATTACAACGTCAAGAAGATGGAGATTTTGGCAACAGTAGCTTTGGAATGTGTAGAGGAAGAGAAAGATGTGAGACCTAGCATGAGTCAAGTCGTTGAAAGACTCCAAAGTCTTGATTAA 2457 0.4607 MATTNSSTQFAKISNNFFMASSSSSSSPTFMAILLLLLYFHSSAALPLSVERLDEDVIISKPKGTFTAGFRNVGENAYCFGVWFSQAEKHVVWMANRDLPVNGKRSSLSLLKNGNLVLSDAGQFDVWNTQTLSEKPLELHLHDTGNLVLREQTNRSSVLWESFNFPTDTLLPGQLLTRFTKLVSARSEGNYSSGFYKLFFDNDNVFRLLYEGREVSSVYWPDPWLVSNNVGSGNGRTSYNSSRVAVLDDLGLFSVSDKYSLTTIDYGLLLQRRLTLDYDGNVRIYSRENGQEDWSIAGQFKSQPCFIHGICGPNSICSHDKAIGRKCECLEGYSWVDSEDWSLGCTPNFKTTCDNKTEYRVVPLYEVDFYGYDYGTSFENYTYKQCEKLCLDVCECMGFQYSFAAENGHFWCYPKTQLLNGHHSPGFTGNFFVRLPKESAQENHLQNNDGLVCPRNAEILLERPYVKGKENGSVKFMLWFAVGLGGFEAVCIFMVWCFLFRSSDHLVRADQQGYVLAAATGFRRYTYSELKQATKGFSEEIGRGAGGTVYKGVLSDNRVAAIKKLHEFADQGESEFLTEMSIIGRLNHMNLIGMWGYCVEGKHRILVYEYMENGSLANNLPSNSLDWRKRYNIAMGMAKGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKPLNRNNLNNSSFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGIVVLEMITGRSPMIGVQVTEPGQESHNERLATWVREKRRKTPEGTSWVEQIVDPTLGSDYNVKKMEILATVALECVEEEKDVRPSMSQVVERLQSLD 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00456 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 221 IPR036426 -
Vimu9g00456 818 Pfam D-mannose binding lectin 91 177 IPR001480 -
Vimu9g00456 818 ProSiteProfiles Protein kinase domain profile. 535 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00456 818 Pfam Protein kinase domain 538 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00456 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Vimu9g00456 818 FunFam Serine/threonine-protein kinase 611 818 - -
Vimu9g00456 818 Gene3D - 49 165 IPR036426 -
Vimu9g00456 818 Gene3D Transferase(Phosphotransferase) domain 1 611 818 - -
Vimu9g00456 818 FunFam S-receptor-like serine/threonine-protein kinase 504 610 - -
Vimu9g00456 818 SMART serkin_6 535 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00456 818 SUPERFAMILY Protein kinase-like (PK-like) 519 814 IPR011009 -
Vimu9g00456 818 CDD STKc_IRAK 541 817 - -
Vimu9g00456 818 CDD B_lectin 62 166 IPR001480 -
Vimu9g00456 818 Pfam S-locus glycoprotein domain 271 334 IPR000858 GO:0048544
Vimu9g00456 818 ProSitePatterns Protein kinases ATP-binding region signature. 541 564 IPR017441 GO:0005524
Vimu9g00456 818 SMART blect_4 50 166 IPR001480 -
Vimu9g00456 818 Gene3D Phosphorylase Kinase; domain 1 502 610 - -
Vimu9g00456 818 PANTHER OS07G0415500 PROTEIN 24 816 - -
Vimu9g00456 818 PIRSF SRK 19 818 IPR024171 GO:0004674
Vimu9g00456 818 ProSiteProfiles Bulb-type lectin domain profile. 44 162 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00456 Vimu-Chr9 5412109 5414675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00456 498 818 Trihelix Transcription Factor Family AT5G38560 39.571 3.60e-68 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu9g00456 Pkinase 9.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00456 - - gmx:100806357 1388.63