Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00449 ATGGACAATTCTGGGTCTTCACAACCTCCATATGGGTATCCAAACCCTTATTTGTACACTGGCAACACCCCTCCATACCCTCCTCCTGATCCATATGCACCACCACCATATCCATATCCATATCCACCAAATGCTCCAGATACCTTCAACTACTCATATCCCCCATCTTCTCTACCACCCTCAGCACCCTATTCTAGCCACACATACCTTCCTCCTCTTCATATTCCACCACCACCTCATGATTCCTTTGCATTTTCTATGCCTCAATCACCCAATACTTATCCTCCAGAATGGAGTAACACAGGAGGTGAAGTACCTCAAAATAGTGATAGTTATAAGCCTCCTGCCGTTTCTATTTACCCTCCTTTGGATGATCGCATGAGCATTGTCAGGCTGTCTGAAACCACAAATACACTTCCTTTGTTGACTCGATCCCGTTCAATTTCAAATTACATTAGAGATGAGTTTTATGGATTCTCTGTCTACTCCCCCTCAGATTTGGATAAAGAGGACCCTACTAGACCTTCTGTTCAATCTGATGACTCAATGGGTGCTCACAGCTTGCAGATTGTCCCAGTCCAGAACAAAGCGTCTCTGCCAGTTTTGCTCCTGCATGGGAATTTAGATATTTGGGTTCATCGAGCCAAACACCTTCCAAACATGGACATGTTCCACAAGACTTTGGGAGATGTGTTTGGGAAGTTGCCTGTAAATGTCAACAAGGTGGATGGAACGGTGAGCCAGAAGATTACCAGTGATCCTTATGTAACAGTTTCTGTGTCTAATGCTGTTATTGGGAGGACTTTTGTGATTAGCAATAGTGAAAACCCTGTGTGGGAGCAACATTTCTATGTTCCTGTTGCACATCATGTAGCTGAAGTTCATTTTGTTGTGAAGGACAGTGATGTGGTGGGTTCGCAGCTCATTGGTGTTGTGGCAATTCCAGCTGAAAAGATATACTCAGGGGAAAAGATACATGGGAGCTACCCTATTCTGAATAGCAGTGGGAAGCCATGTAAGCCAGGTGCTATCTTGAGATTATCCATTCAATACATTCCAATAGAGAAACTTATCACTTATCATCAAGGAGTTGGAGGTGGTCCTGAATATCATGGGGTTCCTGGCACGTATTTTCCATTGAGGAAAGGTGGAATGGTAAATCTTTATCAAGATGCTCATGTCCCAAGTGGTTCTCTACCTAATGTTAAGCTTAACCATGGCTTGTATTACAATCATGGAAAGTGTTGGAATGACATCTTTGAAGCCATACGTGCAGCTCAGAGATTGGTTTACATTACGGGGTGGTCTGTGTGGCACAAAGTTAGGTTGGTAAGGGATGCTGACAATGCAACGGATTCCACCCTGGGTGAACTTCTTAGGACTAAGTCATCGGAGGGAGTCAGAGTGCTTCTACTTGTATGGGATGACCCTACATCAAGAAGCATTCTTGGTTACAAAATGGATGGTGTAATGGCAACTCATGACGAGGAAACTAGACGATTTTTCAAGCACTCTTCTGTGCAAGTTCTGCTTTGTCCTCGCTTTGCTGGAAAACGACATAGTTGGGCCAAACAAAAGTTCGCTATACTTTATGATGGACATACTACTACTGATGGAGTGGTTCCATTTGTTTTAGAGTTCCAAAATAATTTTTTTCTTTCTAATTATCAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATGAAAGAAGAAAAATTGTGGCATTTATTGGTGGACTGGATTTGTGTGATGGGCGATATGATAATCCTTACCATCCTCTCTTTAGGACACTGCATACACTGCATAAGGATGACTATCACAACCCTACTTTCACGGGTAATACTGGTGGTTGTCCACGGGAGCCATGGCATGACTTACATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCGAAACCTAAAGGGATAAAAAAGTTTACAAGTTCATATGATGATGCATTACTTAAGCTAGACAGAATAAAAGATGTTATCAGTTCATCTGATGATCTTCATCTTGATGAGGATAATAATCCTGCATCATGGCATGTTCAGATATTCCGTTCAATTGATTCAAATTCGGTCAAGGGATTTCCGAAGGATCCAAAAGATGCATCAAGCGTTAATCTGGTATGTGGGAAGAATGTACTGATTGACATGAGTATACATACAGCATATATAAAGGCCATTCGTGCTGCACAACATTACATTTATATTGAGAATCAATATTTCATTGGATCTTCATATAATTGGAGTCAATATAAAGATCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCACTGAAGATTGCTGCAAAGATAAGGGCAAATGAGAGATTTGCAGTGTACATTGTTATTCCAATGTGGCCGGAGGGTGTTCCAACAGGTGCTGCCACTCAAAGGATTCTATTTTGGCAGCACAAAACAATGCAAATGATGTATGAAACAATTTACAAGGCTTTGGTTGAAGCTGGGCTTGAAGGAGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGTCTTGGCAATCGGGAGGCAGTAGATGTGTATGAGAATGTCACTGTGTCTGGAAATCCTCCACCAGCAAATAGTCCACAAGCAATTAGTAGAAACAATCGACGATTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTCATATTGGGGTCTGCCAACATCAACCAGCGCTCTATGGAAGGAACAAGAGACACTGAGATTGCAATGGGTGCATACCAACCTTATCATACCTGGGCAAGAAGACAGTTTTATCCACTTGGGCAGATCCATGGATATAGAATGTCACTTTGGGCAGAACATACAGGTACTATTGAAGACTGTTTTTCAGAACCAGAGAGCCTTGAGTGTGTTAGGAGGATTAGAACAATGGGTGAACTGAACTGGAAACAATATGCATCAAATGATGCAACAGAGATGAAAGGGCATCTACTCAAGTACCCTGTAGAAGTTGATAGAAAGGGTAAGGTAAGATCCCTTCCTGGTCACGATGAGTTTCCAGATGTGGGTGGAAAGATTATAGGATCATTTATTGCCATTCAGGAAAATCTAACCATTTGA 3156 0.4144 MDNSGSSQPPYGYPNPYLYTGNTPPYPPPDPYAPPPYPYPYPPNAPDTFNYSYPPSSLPPSAPYSSHTYLPPLHIPPPPHDSFAFSMPQSPNTYPPEWSNTGGEVPQNSDSYKPPAVSIYPPLDDRMSIVRLSETTNTLPLLTRSRSISNYIRDEFYGFSVYSPSDLDKEDPTRPSVQSDDSMGAHSLQIVPVQNKASLPVLLLHGNLDIWVHRAKHLPNMDMFHKTLGDVFGKLPVNVNKVDGTVSQKITSDPYVTVSVSNAVIGRTFVISNSENPVWEQHFYVPVAHHVAEVHFVVKDSDVVGSQLIGVVAIPAEKIYSGEKIHGSYPILNSSGKPCKPGAILRLSIQYIPIEKLITYHQGVGGGPEYHGVPGTYFPLRKGGMVNLYQDAHVPSGSLPNVKLNHGLYYNHGKCWNDIFEAIRAAQRLVYITGWSVWHKVRLVRDADNATDSTLGELLRTKSSEGVRVLLLVWDDPTSRSILGYKMDGVMATHDEETRRFFKHSSVQVLLCPRFAGKRHSWAKQKFAILYDGHTTTDGVVPFVLEFQNNFFLSNYQEVGTIYTHHQKTVIVDADAGNERRKIVAFIGGLDLCDGRYDNPYHPLFRTLHTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGIKKFTSSYDDALLKLDRIKDVISSSDDLHLDEDNNPASWHVQIFRSIDSNSVKGFPKDPKDASSVNLVCGKNVLIDMSIHTAYIKAIRAAQHYIYIENQYFIGSSYNWSQYKDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEAGLEGAFSPQDYLNFFCLGNREAVDVYENVTVSGNPPPANSPQAISRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPYHTWARRQFYPLGQIHGYRMSLWAEHTGTIEDCFSEPESLECVRRIRTMGELNWKQYASNDATEMKGHLLKYPVEVDRKGKVRSLPGHDEFPDVGGKIIGSFIAIQENLTI 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00449 1051 Pfam Phospholipase D C terminal 971 1041 IPR024632 -
Vimu9g00449 1051 SMART pld_4 561 596 IPR001736 GO:0003824
Vimu9g00449 1051 SMART pld_4 897 924 IPR001736 GO:0003824
Vimu9g00449 1051 FunFam Phospholipase D 710 943 - -
Vimu9g00449 1051 ProSiteProfiles C2 domain profile. 184 329 IPR000008 -
Vimu9g00449 1051 MobiDBLite consensus disorder prediction 1 39 - -
Vimu9g00449 1051 SUPERFAMILY Phospholipase D/nuclease 743 983 - -
Vimu9g00449 1051 SUPERFAMILY beta-sandwich domain of Sec23/24 7 998 - -
Vimu9g00449 1051 Gene3D C2 domain 201 339 IPR035892 -
Vimu9g00449 1051 Gene3D Endonuclease Chain A 403 678 - -
Vimu9g00449 1051 SUPERFAMILY Phospholipase D/nuclease 372 660 - -
Vimu9g00449 1051 PANTHER PHOSPHOLIPASE D 198 1041 IPR015679 -
Vimu9g00449 1051 Pfam C2 domain 206 331 IPR000008 -
Vimu9g00449 1051 Gene3D Endonuclease Chain A 709 943 - -
Vimu9g00449 1051 MobiDBLite consensus disorder prediction 20 39 - -
Vimu9g00449 1051 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 204 354 IPR035892 -
Vimu9g00449 1051 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 561 596 IPR001736 GO:0003824
Vimu9g00449 1051 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 897 924 IPR001736 GO:0003824
Vimu9g00449 1051 CDD C2_plant_PLD 201 352 - -
Vimu9g00449 1051 SMART C2_3c 207 328 IPR000008 -
Vimu9g00449 1051 FunFam Phospholipase D delta 201 347 - -
Vimu9g00449 1051 Pfam Phospholipase D Active site motif 562 596 IPR001736 GO:0003824
Vimu9g00449 1051 Pfam Phospholipase D Active site motif 898 924 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00449 Vimu-Chr9 5343469 5351527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00449 36 1051 Phospholipase D Gene Family (Wang group) AT2G42010 65.814 0.0 1376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00449 K01115 - gmx:100805294 1597.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00449 9 5343469 5351527 Vimu9g00449 9 5343469 5351527 ECH