Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00448 ATGGCTGATCAATCTTCTGGAGACGTTGATCTAAGGTTGGGAGAACCTAAGGGGCCGAAAGTGGAGCCCGAGACGGAGGAGGCTTCCGCGATACGTGTGATGCCGGTGGCTGTGCACGTGCCGTCAGGGATGTCCATGTCTGTGTCCAAGGCCCTGGCCCAAGCCCAGGCCCAACCTCAGAAACGGGCCTCCACTAAGGACCGTCACACCAAAGTCGAGGGGCGAGGCAGGAGGATCCGAATGCCCGCCACGTGTGCGGCGCGGATCTTCCAGCTCACCCGAGAGCTAGGTCACAAGTCAGACGGCGAAACCATCCGCTGGCTCCTCGAACACGCCGAGCCCGCCATCATAGCCGCCACCGGCACCGGCACCGTCCCCGCCATCGCCATGTCTGTCAACGGCACGCTCAAGATTCCGACCACCTCTCCCTCCGACCCGGAACTCGGAGACACGCCCGAGAGGAAGAAGCGCAAGCGACCCGCCAACAGCGCCTACGTTGACGTAAACGACGGTGCCGTTTCGGTCCCCGCCGGCCTCGCGAGCTCGAACAAGCAAAGCTCTGGGACGATCACGACGACCGCCTCAACGACGACCACAATTCCGCAGCATACCGCGATTCCGCTGCCGCAGGGCGTGGTCCCCGTGTGGGCGGTGCCTTCAAACGCTGTCGTTCCGACTGCAGGCGCGTTCTTCGTCGTCCCCCAAGCCGCGTCGTTTCAGCACCATCCGCAGTTTTTCACCATAGCACGACCAATCTCCGCGTTTGTCTCCTCCATGGTCACCCCTGTTCAACTCCAACCAACCTCCACTTCCTCTTCTGCTAACGCTAACCCTTCCTCTACTGCGCCGTCGTCGAAGTCCCCGGCGAGAGCCACCGTCATGGCTCCAACCACCACCACCACAACACACATGCTGAGAGATTTTTCGTTGGAGATTTACGATAAGCAAGAGTTGCAGTTCATGTCGCGCGCGTCTTCCAAGCATTGA 987 0.6099 MADQSSGDVDLRLGEPKGPKVEPETEEASAIRVMPVAVHVPSGMSMSVSKALAQAQAQPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSDPELGDTPERKKRKRPANSAYVDVNDGAVSVPAGLASSNKQSSGTITTTASTTTTIPQHTAIPLPQGVVPVWAVPSNAVVPTAGAFFVVPQAASFQHHPQFFTIARPISAFVSSMVTPVQLQPTSTSSSANANPSSTAPSSKSPARATVMAPTTTTTTHMLRDFSLEIYDKQELQFMSRASSKH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00448 328 MobiDBLite consensus disorder prediction 13 27 - -
Vimu9g00448 328 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
Vimu9g00448 328 MobiDBLite consensus disorder prediction 148 163 - -
Vimu9g00448 328 MobiDBLite consensus disorder prediction 135 164 - -
Vimu9g00448 328 Pfam TCP family transcription factor 64 156 IPR017887 -
Vimu9g00448 328 MobiDBLite consensus disorder prediction 1 28 - -
Vimu9g00448 328 MobiDBLite consensus disorder prediction 266 300 - -
Vimu9g00448 328 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 287 IPR005333 GO:0003700
Vimu9g00448 328 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00448 Vimu-Chr9 5295509 5296495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00448 45 327 TCP Transcription Factor Family AT2G45680 53.438 2.68e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu9g00448 TCP 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00448 - - pvu:PHAVU_010G089100g 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00448 9 5295509 5296495 Vimu9g00448 9 5295509 5296495 ECH