Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00426 ATGGATTCAAATATGTTCCACTCAGCTGATTCAAGGAAATACTATTGTCCAGTATTGGGTTTGAAAGTTTTAGTTTTAGATAACAACCTGAGATGTCTTGCAGCGGTGTCAAAAATGCTCCAAACACTAGGATATGAAGTTGTGACTGCTTCACTTGCTTCTGAGGCATTATCCATTGTCAAGGAGAAGAGGAATGAGCTTAACCTTGCCCTTGTCGAGGTTCACTTACCTGACATGGGGATAGTTGTGCTGTCTCAGAAAATAAGAGAATTAACAACCATGCCATATTTCCTTATGACGGCTAATAATGGTACTCTCGGAGAGCTGTTTGGATCTAAACTATGTTTTGAAAAACCAATTAAGATTTCGGATTTAAACAATCTGTGGAAATATGCATTGTGGAAGATAGAAGATGGAAGAGTAACAACGGTAGAAGTAGAGAGCTTTGGGAGGCGTCAGTCACAGGAAACTATTGTAAATACCGGAGAACAGACTCTTCAAAGTGTCATAATTGGAGAGCGTAAACATGAAATAGGGGGAAAACAAAATGAATCATTAATGTTGGGTAGAAAAAGGCTCAACCGGACTTATGATTCAAATATGAAGTTTTTTGGAAGTGAAGGTGTTGAGTTGGCCAGAACCAGTGGAGAAGCTCTTCCAGATCAAAGAAACCAGTTTAGGAACATGTCAGGACTTACAATACAAAATATTCAAAGTCATTTTCAGGTTTATACCATGGCATGGCCTGTGAGTGAAGAGTTTATTTCTGTTATTGAATCCATGATCACCAAGTCATATGACGGAAACCTTACTGCTGCATCAAGGTGTTTCAAATAG 837 0.3871 MDSNMFHSADSRKYYCPVLGLKVLVLDNNLRCLAAVSKMLQTLGYEVVTASLASEALSIVKEKRNELNLALVEVHLPDMGIVVLSQKIRELTTMPYFLMTANNGTLGELFGSKLCFEKPIKISDLNNLWKYALWKIEDGRVTTVEVESFGRRQSQETIVNTGEQTLQSVIIGERKHEIGGKQNESLMLGRKRLNRTYDSNMKFFGSEGVELARTSGEALPDQRNQFRNMSGLTIQNIQSHFQVYTMAWPVSEEFISVIESMITKSYDGNLTAASRCFK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00426 278 ProSiteProfiles Response regulatory domain profile. 22 133 IPR001789 GO:0000160
Vimu9g00426 278 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 239 IPR045279 GO:0009736
Vimu9g00426 278 SMART REC_2 21 129 IPR001789 GO:0000160
Vimu9g00426 278 SUPERFAMILY CheY-like 20 133 IPR011006 -
Vimu9g00426 278 Gene3D - 20 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00426 Vimu-Chr9 5078743 5087667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00426 21 156 Response Regulator Gene Family AT4G16110 26.712 1.69e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu9g00426 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00426 - - var:108347561 413.305