Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00422 ATGGGTATTGATACCAATTTGGTGACTACTATCATTGGGTTTGGGTTGAGTGCAACTTTCATTGTCTTCGTTTGCACAAGAATAATTTGTGGAAGACTACACGAACGTGTTGGAATACGAACAGTATATGAAATCGAACCAAGAACAGACATAGAACGGTCAGAGTTTCATGGTAATGAGCCTGAACCTGCTTTTGTTGCTGCAATCCCCACTTTGAGTTTCAACCATGAAGCCTTCGTTTCAACGGGAAGCACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAAAGAAGTATTGCGCATCATACCAAAATGTGGCCACACTTTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCAACTTGTCCAGTGTGTCGTTTGTCACTGCAAAATGCTTCTGAATCAAAACATGTGAGACATGTAACATTTACCATAAGACATTCTCTGGACGAGTCCAGTGATATTTCCGAAAGGAACATAGAAAGTGAGAGGCAAGTTTAA 510 0.402 MGIDTNLVTTIIGFGLSATFIVFVCTRIICGRLHERVGIRTVYEIEPRTDIERSEFHGNEPEPAFVAAIPTLSFNHEAFVSTGSTQCVICLAEYKEKEVLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNASESKHVRHVTFTIRHSLDESSDISERNIESERQV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00422 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Vimu9g00422 169 PANTHER OS11G0150450 PROTEIN 2 161 - -
Vimu9g00422 169 SMART ring_2 87 128 IPR001841 -
Vimu9g00422 169 CDD RING-H2_EL5-like 86 129 - -
Vimu9g00422 169 Pfam Ring finger domain 86 129 IPR001841 -
Vimu9g00422 169 SUPERFAMILY RING/U-box 86 135 - -
Vimu9g00422 169 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00422 Vimu-Chr9 5036855 5037847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00422 77 132 C3H Transcription Factor Family AT4G10160 53.571 5.21e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00422 - - gmx:100810553 282.337