Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00417 ATGGCAGGAGCTGAAGCTACAAAATATGGTTCTACTACAAGTCCCACAACCACTACTACCACCAACATGGCCACCAGATCGAGCAAGCCAGCAACCATGATCAGAAGATTCATTGGGGTGAGGCAAAGACCCTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCACGTGAGGTTGTGGCTTGGAACCTATGACACCCCAGAAGAGGCTGCAAGGGCCTATGATGAAGCTGCAAGAGCCCTGAGAGGTGAAAATGCCAGAACCAACTTTGCTCCAATGAACCAAGCCACAGGGCAATCAGGGTCTAACCTTTTAACTGGTGATGGGAAGCATGGTTTGAGCTTTGCTTCCTTGAAAGCCAAGTTGAGCAAGAATCTTCAGAACATCATGGCTAGGGCAAGTGATCACAACAAGTCCTCCAAGAGTCGGGTGAGTGACCACTTCACCTTTGCAAGCATCTTCCACCGCAGGAGCTACCAAATCCCTGAAGGGGACATGAGGAACATTGAGAAAGTGGTGCAGCCTAGCATTATAGTACCACCTGTGGAAGGTGCTGTTGATTATGCTTCAGCTGCTAACTGGGAAAGTGCTTCCACTGTCTCTGATTGCAGCTCTGAGTGGGTCGGATTCGGTAAACTCGGGTTGGATCAGTCAGACGGGTCGGATATTGGAGAGTTCAGCGTTGGTGATCAAGGGTTCTTGGAGCAGTTGATGGGGTGGGTTGAAAGCCCTGATGTTACTGATCAAAGTGAGTGTTCAAGGAGTAAGAGGTTCAAGGTATCTTCTTCGGTGCTTGTACCTCCAACTTTCACTGCTTCTCCTTATGACTGTGGATCCCCTTATAGCGGTTATGCCTCCCCTTACAGCGGTTATGCCTCGCCCTATAACGGTTATGCTTCTCCCTATAACGGTTGTGCCTCCCCTTGTAATGGTTGTGCTTCGCCATATTACAACAAGAAGTGA 969 0.4933 MAGAEATKYGSTTSPTTTTTTNMATRSSKPATMIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPMNQATGQSGSNLLTGDGKHGLSFASLKAKLSKNLQNIMARASDHNKSSKSRVSDHFTFASIFHRRSYQIPEGDMRNIEKVVQPSIIVPPVEGAVDYASAANWESASTVSDCSSEWVGFGKLGLDQSDGSDIGEFSVGDQGFLEQLMGWVESPDVTDQSECSRSKRFKVSSSVLVPPTFTASPYDCGSPYSGYASPYSGYASPYNGYASPYNGCASPCNGCASPYYNKK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00417 322 MobiDBLite consensus disorder prediction 7 27 - -
Vimu9g00417 322 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Vimu9g00417 322 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Vimu9g00417 322 SUPERFAMILY DNA-binding domain 37 93 IPR016177 GO:0003677
Vimu9g00417 322 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Vimu9g00417 322 MobiDBLite consensus disorder prediction 1 27 - -
Vimu9g00417 322 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Vimu9g00417 322 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Vimu9g00417 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 185 - -
Vimu9g00417 322 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Vimu9g00417 322 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Vimu9g00417 322 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00417 Vimu-Chr9 4979657 4980625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00417 36 107 AP2-EREBP Transcription Factor Family AT5G19790 64.000 5.63e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu9g00417 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00417 K09286 - gmx:100799444 455.292