Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00414 ATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGTGTTGTGGTACTTCTTGACAGGTTTGCTTTCATTTACATGGAAGATGAGCGAGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACTGAATTTGGTAGAAAGGGACGCCGTATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGAGGTGGTGATTCCAGAAAACCTTCATCTAATTCAAGGCCATCCAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCCAGGACAAAGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATATTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACGGTGGAGTATGCCATAAGAGATGATGATGATAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGCTCATGACTCGCCTGATGGGAGATATGGTCGTGGTAGATCGCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCCGACCAGAAACAAAAGGAAGCCCCAAGTATGAACGAGCTGAAATCGGTCTCCACCACCCCGAGAAAGGTCACGTTCTTGAAGAAAAGCTGTAG 708 0.4379 MFQHRNHDDFATVAGVVVLLDRFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGGDSRKPSSNSRPSKTLFVINFDPVHARTKDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRAHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPETKGSPKYERAEIGLHHPEKGHVLEEKL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00414 235 MobiDBLite consensus disorder prediction 157 179 - -
Vimu9g00414 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 154 IPR000504 GO:0003723
Vimu9g00414 235 Gene3D - 76 205 IPR012677 -
Vimu9g00414 235 Gene3D - 8 75 IPR012677 -
Vimu9g00414 235 MobiDBLite consensus disorder prediction 210 235 - -
Vimu9g00414 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 147 IPR000504 GO:0003723
Vimu9g00414 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 60 IPR000504 GO:0003723
Vimu9g00414 235 MobiDBLite consensus disorder prediction 157 235 - -
Vimu9g00414 235 SMART rrm1_1 84 150 IPR000504 GO:0003723
Vimu9g00414 235 FunFam serine/arginine-rich splicing factor RS41 isoform X2 75 206 - -
Vimu9g00414 235 MobiDBLite consensus disorder prediction 59 83 - -
Vimu9g00414 235 SUPERFAMILY RNA-binding domain, RBD 10 158 IPR035979 GO:0003676
Vimu9g00414 235 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00414 Vimu-Chr9 4952108 4953493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00414 9 175 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 6.76e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00414 K12893 - gmx:100815452 332.413