Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00413 ATGGCTTTGTTGACATCAATTCAATTTTACTTTACCACCACTCTGTCCAAATTTGAAATCATGGTCGAAGATAGTAAAGCTGCAGTAGCAGTTGATGATGCCTGTTCAAGAGAAAACTTGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCCAAGGCGAAAGAGGTTAAGGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGCAGCAGATTCCCTCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCTGTGTCAAAGACGCTTAAAGAAACCACAGAATTGGCTGAGCTGTGTGTGATGGAGAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTCGGTGAAGCTACTTTGCCATTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAATATAAGAGAACTACTAGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATGTTATGAAAGAGGATGAAAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGAAGACGGTTACTGTTATATGCTCTCTGGTGGAATCTGGGAGCTGTGAAAAGTGGCTAGTTTCTGAAGGAGTTCTTCCACCTCTTATTAGACTTGTTGAATCTGGTAGTGCTGTCAGTAAAGAGAAGGCTATAGTATCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTTGGACATGGTGGTGTTCGGCCATTGATTGAGCTTTGTGAGAGTGGAGATTCCGTGTCACAGGCTGCTGCCGCCTGCACTTTGACAAACGTATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTAAGAGTTATGATCAATCTTCTTAGTTGTGGAATTTTGTTAGGTTCCAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTCACTTCAAGCAATGAGCATTTGAGAAAGTGTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACCTATCTAGATGGTCCACTTCCTCAAGAATCCGCAGTTGGAGCATTGAGGAATCTGGTTGGACCAGTTTCTGAGGAAACTATGGTTTCTCTTGGCTTGCTTCCTTGTTTGGTTCACGTTCTGAAGTCTGGATCTTTGGGTGCTCAACAAGCTGCAGCTTCTGTCATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAACAAATACTGCTAGAGAGATTGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCTCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTTCCAAATCTTGTCCAGTTGCTTGATCCAAGCTCTCAGAACACAGCCAAAAAGTATGCAGTTTCATGCCTTGGATCACTTTCTCCATGTAAGAAGTGTAAGAAACTGATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTTCTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1746 0.4347 MALLTSIQFYFTTTLSKFEIMVEDSKAAVAVDDACSRENLLLHAQELVPVALAKAKEVKVFPGRWKMIISKLQQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKETTELAELCVMEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNVSAVPEVRQALAEEGIVRVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGPVSEETMVSLGLLPCLVHVLKSGSLGAQQAAASVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSSQNTAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00413 581 Gene3D - 411 562 IPR011989 -
Vimu9g00413 581 Gene3D - 173 408 IPR011989 -
Vimu9g00413 581 SMART arm_5 411 450 IPR000225 GO:0005515
Vimu9g00413 581 SMART arm_5 451 491 IPR000225 GO:0005515
Vimu9g00413 581 SMART arm_5 206 246 IPR000225 GO:0005515
Vimu9g00413 581 SMART arm_5 288 328 IPR000225 GO:0005515
Vimu9g00413 581 SMART arm_5 329 370 IPR000225 GO:0005515
Vimu9g00413 581 SMART arm_5 372 410 IPR000225 GO:0005515
Vimu9g00413 581 SMART arm_5 492 534 IPR000225 GO:0005515
Vimu9g00413 581 SUPERFAMILY ARM repeat 177 558 IPR016024 -
Vimu9g00413 581 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 258 300 IPR000225 GO:0005515
Vimu9g00413 581 Pfam Armadillo/beta-catenin-like repeat 290 328 IPR000225 GO:0005515
Vimu9g00413 581 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 33 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00413 Vimu-Chr9 4941077 4944335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00413 421 559 U-box Gene Family AT3G54790 28.777 3.91e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00413 - - var:108346326 1086.25