Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00412 ATGGCGCTCCCCACCAAGAACCAAGATGACATTTGGAGAGCTGCTCTGTCCGAATTCTTCTCAACACTCATTTTCGTCTTCGCCGCCTCCGGCTCCGCCATTCTTGTCAAAAACCTCTCCGTCGACGAGCCCACTGCTTCCCACGCTGTCGCCATTGCCAACGCCTTCGCCCTCTCCGCTGCCGTCTCCTTCGGCACAAACATCTCCAGCGGCCACGTCAACCCCGCAGTCACCTACGCCCGCTTTGTCGGCGGCAAACTTACCTGGCTCCGCTGTATCATCTTCTGGTTCGCGCAGATCCTCGGCTCCGTCATCGCCTGCTTGCTCCTAAAGTTCATCTCCGGCGGACAGAGAATACCGGTTTTTGAACTTTCGAGTGGTATGGAAGGGAAAAACACTGTGATGTTGGATATGACGAGGACGTTTGGTTTCATGTGCGGGGCATATCGCATTTATTCCAGTAGTAGCAGGAACGTTTCGAAAGCGATGAAACTTCTTATTGGCTTAGCCGTTGGAGTCAATTATTTGTGGATGAGGCTTTCCTTTGATGGGGTCTGCATGAACCCGGCTGCATTGTTTGGGCCTGCTCTGGTGGGCTGGAGCTGGGAAAACCATTGGGTTTACTGGGTTGGGCCTCTCTTGGGCGGTGGGCTTGCTGCTTGTTTGAATGAAATGTTTGAAAGAACTGTTTAG 693 0.531 MALPTKNQDDIWRAALSEFFSTLIFVFAASGSAILVKNLSVDEPTASHAVAIANAFALSAAVSFGTNISSGHVNPAVTYARFVGGKLTWLRCIIFWFAQILGSVIACLLLKFISGGQRIPVFELSSGMEGKNTVMLDMTRTFGFMCGAYRIYSSSSRNVSKAMKLLIGLAVGVNYLWMRLSFDGVCMNPAALFGPALVGWSWENHWVYWVGPLLGGGLAACLNEMFERTV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00412 230 Gene3D Glycerol uptake facilitator protein. 4 229 IPR023271 -
Vimu9g00412 230 Pfam Major intrinsic protein 10 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00412 230 PRINTS Major intrinsic protein family signature 206 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00412 230 PRINTS Major intrinsic protein family signature 54 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00412 230 PRINTS Major intrinsic protein family signature 13 32 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00412 230 PRINTS Major intrinsic protein family signature 91 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00412 230 PANTHER AQUAPORIN-8 8 226 IPR034294 -
Vimu9g00412 230 SUPERFAMILY Aquaporin-like 10 226 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00412 Vimu-Chr9 4938623 4939414 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00412 7 226 Major Intrinsic Protein MIP AT2G36830 46.696 5.26e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00412 K09873 - gmx:100820403 245.743