Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00407 ATGGCGCTCGCCTCCAAAATCCGTAGGACCCAAGATGCCACTCACCGCGACAATTGGAGAGCCGCTCTCTCCGAGTTCATCTCCACACTCATCTTCGTCTTCGCTGCCTCCGGCTCCACCATTGCCGTCAAAAACCTCACTGACGACGGGCCCACCGCACTCGTCACCGTCGCCGTTGCCAACGCCTTCGCCTTCTTTGTCGCCGTCTCCGTCAGCACAAACGTTTCCGGCGGCCACGTCAACCCCGCAGTTAGCTTCGCCGCCTTTATCTGCGGCAACCTTACCTGGCTCCGCTGCATCTTCTTCTGGATCGCGCAGATCCTCGGCTCCGTCATCGCCTGCTTGCTCCTCAAGTTCACCTCCGGCGGACAGAGAATTCCAGTTTTTGAACTTTCGAGTGATATGAAAGTGGAAAACGCTTTAGTGTTGGAGATGGTGATGACGTTTGGGTTGGTGTACGCGGTGTATGCTACCACCGTTGACCCCAGGAGCAGAAGGAACGGTTTGGGAGCGATAGCACCACTTGTGATTGGCTTAGTCGTTGGGGCAAATAATTTGGTAGGTAGCCCTTTCGATGGGGCCTCCATGAACCCGGCTTTATCGTTTGGGCCTGCCCTGGTGGGCTGGAGCTGGGAAAACCATTGGGTTTACTGGGTTGGGCCTCTCGTAGGCGGTGGGATTGCTGGATTTCTTTATGAATTGGTTTTTGTTAGTTACGACCGTCAGGTTCCGCAGAGGTTACCATAG 747 0.5542 MALASKIRRTQDATHRDNWRAALSEFISTLIFVFAASGSTIAVKNLTDDGPTALVTVAVANAFAFFVAVSVSTNVSGGHVNPAVSFAAFICGNLTWLRCIFFWIAQILGSVIACLLLKFTSGGQRIPVFELSSDMKVENALVLEMVMTFGLVYAVYATTVDPRSRRNGLGAIAPLVIGLVVGANNLVGSPFDGASMNPALSFGPALVGWSWENHWVYWVGPLVGGGIAGFLYELVFVSYDRQVPQRLP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00407 248 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00407 248 PRINTS Major intrinsic protein family signature 98 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00407 248 PRINTS Major intrinsic protein family signature 61 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00407 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00407 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00407 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00407 248 ProSitePatterns MIP family signature. 79 87 IPR022357 -
Vimu9g00407 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g00407 248 PANTHER AQUAPORIN-8 7 238 IPR034294 -
Vimu9g00407 248 SUPERFAMILY Aquaporin-like 13 239 IPR023271 -
Vimu9g00407 248 FunFam Probable aquaporin TIP1-1 4 247 - -
Vimu9g00407 248 Gene3D Glycerol uptake facilitator protein. 3 245 IPR023271 -
Vimu9g00407 248 CDD MIP 20 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00407 Vimu-Chr9 4889049 4889951 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00407 7 245 Major Intrinsic Protein MIP AT2G36830 60.494 1.39e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00407 K09873 - gmx:100820403 363.229