Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00394 ATGAGTTTTGGGGGTTTTCTTGACAACAAATCGGGTAGTGGCGCAGCCAGACACGACCTTTTGGATATTCCTTACAACAACGTTACCACCACCAACCATAACAACACCAACGAAGACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGCCTGGTGACCACCACCACTCCAACCCTGGCCAAATCCATGTTCAACTCCCCAGGACTATCTCTGGCACTTCAAACCAATATAGATGGACAAGAAGATGTGAATAGAATGGTCGAAAATAGCTTCGAACCAAACGGTTTGCGAAGAAGCAGAGAAGAAGAACATGAAAGCAGATCTGGAAGCGACAACATCGACGGCGCTTCCGGCGATGAACAAGATGCCGCCGACAACCCTCCGAGGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTTGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAGAAACAAAGACTCGAACTTAGCAAGAGGCTGTGCTTGGAAACTCGACAGGTGAAGTTTTGGTTCCAAAACCGGAGAACCCAAATGAAGACCCAGTTGGAGCGGCACGAGAACACTTTGCTGAGGCAAGAGAACGACAAGCTGAGAGCGGAGAACATGTCTATCAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGTGGACCTGCCATCATCGGCGAGATTTCGCTCGAGGAGCAGCACCTTCGGATTGAGAACGCCCGGTTGAAGGACGAGCTCGATCGCGTGTGTGCACTCACGGGCAAGTTTCTGGGTCGCCCCGTTTCTTCGTTACCGAATTCAAGTTTGGAGCTTGGCGTTGGGGGGAACGGGTTTGGTGGAATCAGCATTGGCACTACATTGCCTTTAGGACAAGATTTTGGGATGGGAATGTCGATGTCTGTGTCTAACAACCCTTTGGCTATGGTTTCTCCCTCTAGTACCCGACCAACTTCTGTCGTGGGTGGGTTTGATAGGTCCATGGAAAGGTCCATGTTTCTTGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCTCAAACTGGGGAGCCTCTTTGGGTGAGGAATGTTGAAGGTGGGAGGGAAATCATGAACCATGAGGAGTACGCGAGAACCTTCACTCCTTGTATTGGTTTGAGACCAAATGGGTTTGTGTCCGAAGCCTCTAGGGAAAATGGAATGGTCATCATTAACAGTTTGGCACTTGTTGAGACTCTCATGGACGCGAATCGATGGGCAGAGATGTTTCCTTGTATCATTGCAAGAACCTCCACTACTGAAGTGATATCTAACGGGATAAATGGAACAAGAAATGGAGCACTTCAATTAATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTTCCTGTGCGTGAGGTAAATTTCCTAAGGTTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCAGTGGTGGATGTGTCCATAGATAGCATCAGAGAAAGTTCAGGAGCACCATCCACTTTTGTCAACTGTAGGAGGCTTCCTTCTGGTTGTGTTGTGCAAGACATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCACGCAGAATACGATGAGAGCCAAATTCACCAGGTTTATAGACCATCGTTGAACTCAGGCATGGGGTTCGGTGCTCAACGTTGGGTGGCTACCCTTCAACGCCAATGCGAGTGTCTTGCAATCTTAATGTCCTCAGCAGCACCCTCTCGAGACCATTCAGCAATAACGGCGGGGGGAAGGCGGAGCATGGTGAAGCTGGCGCAGCGAATGACCAACAACTTCTGCGCCGGCGTGTGTGCCTCCACGGTGCACAAGTGGAACAAGCTCAACCCCGGGAATGTGGATGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGATGATCCCGGCGAGCCGCCGGGGATTGTGCTGAGCGCAGCCACCTCCGTTTGGCTCCCCGTGTCGCCGCAGAGGCTCTTTGACTTTCTTCGGGATGAGCGCCTCCGAAGCGAGTGGGACATACTCTCCAACGGCGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACTGCGTCTCTCTCCTCCGAGCCAGTGCCATAAACTCCAGCCAGAGCAGCATGCTTATACTACAGGAGACATGCATAGACGAGGCGGGGTCACTTGTGGTCTACGCGCCGGTGGATATTCCGGCCATGCATGTTGTTATGAACGGTGGTGATTCAGCTTACGTGGCACTGTTGCCATCGGGATTTGCTATTGTTCCTGATGGGCCTGGGTCTCGTGGGTCACAGAATGGGCCTACTGCCGCAACAAACGGTGGTGATAATGGTGCTGCACGCGTGAGTGGGTCCCTCTTAACGGTTGCTTTTCAGATCCTTGTGAATAGTCTTCCTACAGCCAAGCTCACAGTAGAGTCCGTGGAAACCGTGAACAACCTCATATCATGCACCGTTCAAAAAATCAAAGCTGCACTGCACTGTGAAAGTTAA 2499 0.5162 MSFGGFLDNKSGSGAARHDLLDIPYNNVTTTNHNNTNEDDRMPFGAISQPRLVTTTTPTLAKSMFNSPGLSLALQTNIDGQEDVNRMVENSFEPNGLRRSREEEHESRSGSDNIDGASGDEQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALTGKFLGRPVSSLPNSSLELGVGGNGFGGISIGTTLPLGQDFGMGMSMSVSNNPLAMVSPSSTRPTSVVGGFDRSMERSMFLELALAAMDELVKMAQTGEPLWVRNVEGGREIMNHEEYARTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPSTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQIHQVYRPSLNSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSSQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSQNGPTAATNGGDNGAARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00394 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 127 829 IPR042160 -
Vimu9g00394 832 SMART START_1 338 563 IPR002913 GO:0008289
Vimu9g00394 832 MobiDBLite consensus disorder prediction 91 138 - -
Vimu9g00394 832 SUPERFAMILY Bet v1-like 590 825 - -
Vimu9g00394 832 Gene3D - 117 204 - -
Vimu9g00394 832 MobiDBLite consensus disorder prediction 764 779 - -
Vimu9g00394 832 Coils Coil 182 214 - -
Vimu9g00394 832 ProSiteProfiles START domain profile. 329 566 IPR002913 GO:0008289
Vimu9g00394 832 FunFam Homeobox-leucine zipper protein HDG1 118 204 - -
Vimu9g00394 832 Pfam Homeodomain 131 186 IPR001356 GO:0003677
Vimu9g00394 832 MobiDBLite consensus disorder prediction 95 111 - -
Vimu9g00394 832 Pfam START domain 338 563 IPR002913 GO:0008289
Vimu9g00394 832 CDD homeodomain 130 188 IPR001356 GO:0003677
Vimu9g00394 832 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Vimu9g00394 832 SMART HOX_1 129 192 IPR001356 GO:0003677
Vimu9g00394 832 SUPERFAMILY Homeodomain-like 117 188 IPR009057 -
Vimu9g00394 832 SUPERFAMILY Bet v1-like 330 563 - -
Vimu9g00394 832 FunFam Homeobox-leucine zipper protein GLABRA 2 338 562 - -
Vimu9g00394 832 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Vimu9g00394 832 MobiDBLite consensus disorder prediction 760 779 - -
Vimu9g00394 832 CDD START_ArGLABRA2_like 333 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00394 Vimu-Chr9 4677195 4683506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00394 1 832 Homeobox Transcription Factor Family AT3G61150 65.755 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu9g00394 START 2.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00394 K09338 - gmx:100811873 1470.68