Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00393 ATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCTATTTCTTCAGATCCTCCGTTAGGTTTTGAGAGAGAGGATCATGTTAATTGTTTAAGGATTCTGAGATTTTTTGGAACTACTGAGGATGCTGCTTTGGAAGGTCAGTTACGTGTGCCTATTAAAAGGGAAGTTTTGCCTTCATTGCAAAATACATTACGTAGATTAAGTGATAAATTGAACTTAAAGATAGTGCAAGCTGCTTCTTTTCAGGGAGGGGATTCTAACTCGAAAAGAGCCAAGTTTGAACAAGAAACTGAAGTGAACCCTGTTGAGAAATCAAATATTGTTGAGACCATCTGCACAGATCAGGATCAGCCTGTTGATGCACCAAAAGAAACTACAGTTGGCATATCCGATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGCTATGATGAGCTTCCCAAAGAATTAAATGAAATGAAAATTAGAGATGAGAAAAGCAAGAACAACAATGACAAGGATATAGAAGCAACTGTTGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATAACAACTGCCATTGGTGGTCGGGATGGACAACCAAAGCAGACAATCTCATACATGGCCGAACGTGTTGTTGGGACTGGTTCTTTTGGTGTCGTTTTTCAGGCTAAGTGCCTTGAGACTGGTGAAGCAGTTGCCATAAAGAAAGTGTTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACCATCCAAACGTTGTTAAACTAAAGCACTGCTTCTTTTCAACCACCGACAAAGATGAATTATACCTTAACTTAGTTCAGGAGTATGTACCTGAAACTGTCTACAAAGTTTCGAAACACTATGTTAGGATGCACCAACATATGCCCATGATTTATGTGCAACTGTATACATACCAGATATGCCGTGCATTGAATTATTTACATCAAGTTATCGGTGTCTGTCACCGTGACATCAAACCCCAGAATCTACTGGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATTTGCTCTCGATATTATAGAGCTCCTGAACTTATATTTGGGGCAACTGAATACACTACCGCCATTGATATGTGGTCTGTTGGTTGTGTTTTAGCTGAGCTACTTCTAGGACAGCCATTGTTTCCTGGTGAAAGTGGGGTTGATCAGTTAGTAGAGATAATCAAGATCTTGGGAACTCCAACCAGAGAAGAAATAAGGTGCATGAATCCCAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCATCCATGGCACAAGGTTTTTCACAAGAGAATGCCACCTGAAGCTGTGGATCTGGTGTCAAGGCTGCTTCAGTATTCTCCAAATCTACGTTGCACTGCTTTGGCTGCTTGTGCACATCCATTTTTTGATGAACTGCGGGATCCAAATGCATGCTTGCCAAATGGGCGACCCCTACCTCCTTTGTTCAACTTCACATCTCATGAACTGGCAAATGCACCTGAAGAGTTGCGGCGCCGCCTCATTCCTGAACATGCAAGGAGTTGA 1605 0.4143 MNMMRRLKSIASGRTSISSDPPLGFEREDHVNCLRILRFFGTTEDAALEGQLRVPIKREVLPSLQNTLRRLSDKLNLKIVQAASFQGGDSNSKRAKFEQETEVNPVEKSNIVETICTDQDQPVDAPKETTVGISDVSTVARTEKSGYDELPKELNEMKIRDEKSKNNNDKDIEATVVSGNGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNVVKLKHCFFSTTDKDELYLNLVQEYVPETVYKVSKHYVRMHQHMPMIYVQLYTYQICRALNYLHQVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDELRDPNACLPNGRPLPPLFNFTSHELANAPEELRRRLIPEHARS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00393 534 ProSiteProfiles Protein kinase domain profile. 205 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00393 534 FunFam Shaggy-related protein kinase kappa 285 533 - -
Vimu9g00393 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672|GO:0006468
Vimu9g00393 534 SUPERFAMILY Protein kinase-like (PK-like) 204 516 IPR011009 -
Vimu9g00393 534 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 165 533 - -
Vimu9g00393 534 Gene3D Transferase(Phosphotransferase) domain 1 285 533 - -
Vimu9g00393 534 Pfam Protein kinase domain 205 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00393 534 FunFam Glycogen synthase kinase-3 beta 189 284 - -
Vimu9g00393 534 MobiDBLite consensus disorder prediction 1 24 - -
Vimu9g00393 534 Gene3D Phosphorylase Kinase; domain 1 190 284 - -
Vimu9g00393 534 SMART serkin_6 205 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00393 534 CDD STKc_GSK3 200 492 IPR039192 -
Vimu9g00393 534 ProSitePatterns Protein kinases ATP-binding region signature. 211 235 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00393 Vimu-Chr9 4634055 4638045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00393 211 492 Core Cell Cycle Gene Families AT1G76540 35.517 1.68e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu9g00393 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00393 K27414 - gmx:100811346 864.374