Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00379 ATGGCTTTCCCTCCTTACCGAAGATCCCATTTGCGTAGCAACACTTACCATGCTCTTGTTCACCTACTCTCTCACTTTGCTGAGTACAACTCTTCGCATGAAACTCCAACCCAATCTTTCAACATTCCCGTTGTTGAGTCTGATTTTTTGGGTCCTAAGGATCCTATTAGCCATAAAGATATAGTGGAGGTTCAGGAGATCTTTGAGGGGGTTGGAGACAAGGATACGGATTTTACTTCCAACAAGATTGCCCTAGATGATATAGAACATATGATGGAAATAGAGGACATGCCTACCCAAGTAAATGGTTTTGATAAGGAGCATGAGCTAATGAATGAGTTTGAACTGGTTATGAAAGGAACTGAAGATCTTATTTGTGATAGTGATTTAATTCCCACGATCACTGAATTTGATGAGAAACATAATGATGGCCGTGAAGTTGGGTTGATGGACTCTCAAGTAGACATGGAAGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGGCAATTCATGTGATGTTCGGTCTGCAGATGCTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGAGCCTGTAAATGTAACTAGAAATATGATGTATCCTTCTACGATTGTGAACCAAGAAAAGGAGAAAGATTGTGAGCCTACTTCCTCTGTGGTAAATTCTCTTCAAGATGGCAATGATAATGGACAAGTGGAGCCTATACCTGGTGACAACAAAAGAATTGCATGCAGAGTTGAAGTAGCAATTTCTGAAAAAACTTTTGAATGTAAGAAGGAAGATAAAATGAAGTTGATGAATGCCAGTAAAAGGAACAAGCGTGGTGGAAAGAAAGACAAAAAAAAGAAGGCGTATAGAATGAAGAGAGCAGAAAAGAACAGAGAGCTAGGTGTTAAAAGTTTGCAGTTTCAGAAGTTTGTACAGAAACCAAAAGCTGTCTCACATTGTCGGCATTATATAATGGGAAGGTGCTATGAGGGTGACAAGTGTCAGTTTTCACATGATGTGGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGAATGATTGCCCATTTGATCACGAGCTCTCAAAGTATCCTTGTAACAATATTCTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCTCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAGTACACCAGTTAGCAATAATCATGCCTCTGGTTCTATGCAGCAAAATCTCTTAACTCATTCCTCTGGAATTCATTCTCGGGTCAATGTTGAACATAAGGCAACAAACACTGCACAAAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTCACGCCGAGCCCTTCTGCACTAAAACAAGGCACAGTAACAATCAAGGAAAGTCCTTTACAAACAGGGACGCATGAAGAACAACGTACATTTAACAAAAGCCAAAACAAGGTTGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAAGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTCTGGCTCTAAAACTCATATTCATCCTAATGTGAGTACAGAAAATGGTTTCAATTTGCCTCGGTTACTCAATTTTGGTTTGCCTGAGCAGATAAAGAAGGATGTCCACGACAAACCTAGTGACAGGACAAAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAGGAAAAAATCAATCTGTGTCAGAGGGAGTAAAATCCAAGTTTCCAGATAAAACCTCTGCTACACCAAGTCCTTTTGATTCAATCCAGTCTTCTGAACACCTAAAATCTGATTATCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTCTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATGCCCTTCCGTTGATTCATCAGCATGA 2010 0.3995 MAFPPYRRSHLRSNTYHALVHLLSHFAEYNSSHETPTQSFNIPVVESDFLGPKDPISHKDIVEVQEIFEGVGDKDTDFTSNKIALDDIEHMMEIEDMPTQVNGFDKEHELMNEFELVMKGTEDLICDSDLIPTITEFDEKHNDGREVGLMDSQVDMEEGEISGDLGKDGNSCDVRSADALILPQKQVDDLQEPVNVTRNMMYPSTIVNQEKEKDCEPTSSVVNSLQDGNDNGQVEPIPGDNKRIACRVEVAISEKTFECKKEDKMKLMNASKRNKRGGKKDKKKKAYRMKRAEKNRELGVKSLQFQKFVQKPKAVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGNDCPFDHELSKYPCNNILSQGFCRRGESCLFSHQVSKEDISTPSNMRRPVLSTLQSGNANSSTPVSNNHASGSMQQNLLTHSSGIHSRVNVEHKATNTAQKQPTPPKGISFINLAKFTPSPSALKQGTVTIKESPLQTGTHEEQRTFNKSQNKVEIAKKLPSVTPKGVNFLSFGKGSVSGSKTHIHPNVSTENGFNLPRLLNFGLPEQIKKDVHDKPSDRTKQSVSLSDIFLNEILGKNQSVSEGVKSKFPDKTSATPSPFDSIQSSEHLKSDYHKHASNSSQKALLSTLAFAAEHESDIKMKCPSVDSSA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00379 669 ProSiteProfiles Zinc finger C3H1-type profile. 371 394 IPR000571 GO:0046872
Vimu9g00379 669 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Vimu9g00379 669 SMART c3hfinal6 369 393 IPR000571 GO:0046872
Vimu9g00379 669 SMART c3hfinal6 341 367 IPR000571 GO:0046872
Vimu9g00379 669 MobiDBLite consensus disorder prediction 603 625 - -
Vimu9g00379 669 ProSiteProfiles Zinc finger C3H1-type profile. 312 339 IPR000571 GO:0046872
Vimu9g00379 669 SUPERFAMILY CCCH zinc finger 313 337 IPR036855 GO:0046872
Vimu9g00379 669 Pfam CCCH-type zinc finger 317 337 IPR041367 -
Vimu9g00379 669 ProSiteProfiles Zinc finger C3H1-type profile. 341 368 IPR000571 GO:0046872
Vimu9g00379 669 MobiDBLite consensus disorder prediction 603 636 - -
Vimu9g00379 669 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 145 664 IPR045124 GO:0003723|GO:0045892
Vimu9g00379 669 MobiDBLite consensus disorder prediction 219 238 - -
Vimu9g00379 669 Gene3D - 304 369 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu9g00379 zf-CCCH_4 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00379 - - vun:114165961 1143.26