Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00377 ATGGCGGAAGAAAATGAAGAAATAAAAACATTTAAGGATTTGGGCTTATCTGAATCACTGGTTGAAGCTTGTGAAAAATTGGGTTGGAAAACTCCACTGAAGATACAGACAGAAGCTATTCCTCTTGCATTAGAAGGTAAAGATGTGATAGGGCTTGCCCAAACTGGTTCTGGGAAGACAGGAGCTTTTGCTCTTCCTATATTGCATGCCCTCTTAGACGCACCTCGTCCAAAAGATTTCTTTGCTTGTGTGCTGTCTCCCACCAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCAGAAATTGGTGTCAAGTGCGCTGTGCTTGTTGGAGGAATTGACATGGTGCAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTAAGTTTCACCATTCCTGTCTTAGATGAGGCTGATAGGTTGTTGAACGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAATGATTCCTCGTGAGCGTAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTCCAGAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCGTCTAAATATTCCACTGTTGACACATTGAAGCAGCAGTATCGATTCTTGCCTGCCAAACACAAGGACTGCTACCTAGTATATATCCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGTACCTGTGATTCAACTCGACTTCTAGCATTGATCCTTAGGAATCTTGGTTTAAAAGCGGTACCTATTAATGGTCATATGAGCCAGCCGAAGAGACTTGGAGCTTTGAACAAGTTCAAATCTGGGGATTGCAATATTCTCCTTTGTACTGATGTGGCTAGCAGAGGACTGGATATTCCCACTGTAGATATGGTGATTAACTATGATATTCCCACAAATTCCAAAGATTATATACATCGCGTGGGAAGAACTGCTCGAGCAGGACGCTCTGGAGTTGCCATTTCCCTTGTAAATCAGTATGAACTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAAAAGCTACCTGAGTACCCTGCACAAGAAGAGGAAGTTCTCCTTTTGGAAGAACGTGTTAGTGAAGCCAAAAGATTAGCTGCCACGAAAATGAAGGAGGCTGGAGGGAAGAAGAAACGAAGAGGTGAGGAATATAATGACGGGGAAGATATCGACAAGTACTTGGGTCTCAAGGATGGAAAATCATTCAAGAAGTTTAGAAGATGA 1260 0.4183 MAEENEEIKTFKDLGLSESLVEACEKLGWKTPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLDAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVSFTIPVLDEADRLLNEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILRNLGLKAVPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAATKMKEAGGKKKRRGEEYNDGEDIDKYLGLKDGKSFKKFRR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00377 419 Pfam DEAD/DEAH box helicase 34 135 IPR011545 GO:0003676|GO:0005524
Vimu9g00377 419 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Vimu9g00377 419 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 194 IPR014001 -
Vimu9g00377 419 CDD SF2_C_DEAD 206 335 - -
Vimu9g00377 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 347 IPR027417 -
Vimu9g00377 419 Gene3D - 137 202 IPR027417 -
Vimu9g00377 419 Gene3D - 203 372 IPR027417 -
Vimu9g00377 419 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 140 384 - -
Vimu9g00377 419 Gene3D - 1 136 IPR027417 -
Vimu9g00377 419 SMART helicmild6 245 326 IPR001650 -
Vimu9g00377 419 Pfam DEAD/DEAH box helicase 140 183 IPR011545 GO:0003676|GO:0005524
Vimu9g00377 419 Pfam Helicase conserved C-terminal domain 221 326 IPR001650 -
Vimu9g00377 419 SMART ultradead3 28 209 IPR014001 -
Vimu9g00377 419 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 221 365 IPR001650 -
Vimu9g00377 419 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 140 148 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00377 Vimu-Chr9 4449148 4456192 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00377 6 358 Eukaryotic Initiation Factors Gene Family AT3G19760 29.067 1.39e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00377 K14777 - gmx:100775796 746.117