Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00374 ATGGAAGCAGCAACGGTAGCAACCTCTTCTCTGAAGAAGCTGAAGCGGAAGCGCGCCCTGGCAAAAAGCGATCCTGAACTCGAACGACTCAACTCGCTTCCGTGGAACTCTTCTCTTCCTCAAAACGACGACGACGAAGCTTTCTCCTTGTTCATTGGCACCAACGAACTCGAAGGAGATGGCAAGAGGAAGACGAAGAAGAAGAAGTCTATGCAGCATAAAGATGTGAAGAAACAACAGCAAGATGGAGGTGATGGTGCTAGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTGAAGGCTAAAGAGAAGAAAAAGAAGAAGAAGAAGAAGAAGACGAAAAAGAAGGATGCTACGGATGGCCAGAAAGATGAGCAACCAGATGCTGGTTTAGATGCTAATGTTGAAGATGGTAACGGTGAAGAGGACAATGATGAAGCTGAATTTTATGCATGGAGTGAGTTGAGGCTTCACCCTCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACCGGATCTGGTAAAACATTGGCGTTTGGTTTGCCCATTTTGCAACGCATTTTGGAGGAGAGAGAAAAGGATGCAAACATGGTTGAAGAACCTGGAAAGTATTCTCCTAAAGGAGTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTACTTGCAAGGCTTTTATCAACTTTTCATAGTTGTCAAAAAAATACTTGA 804 0.4515 MEAATVATSSLKKLKRKRALAKSDPELERLNSLPWNSSLPQNDDDEAFSLFIGTNELEGDGKRKTKKKKSMQHKDVKKQQQDGGDGASSDEVEAELDESVKAKEKKKKKKKKKTKKKDATDGQKDEQPDAGLDANVEDGNGEEDNDEAEFYAWSELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKDANMVEEPGKYSPKGVLRALIIAPTRELALQVLARLLSTFHSCQKNT 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00374 267 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Vimu9g00374 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 262 IPR027417 -
Vimu9g00374 267 Coils Coil 89 113 - -
Vimu9g00374 267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 267 IPR014001 -
Vimu9g00374 267 Gene3D - 93 266 IPR027417 -
Vimu9g00374 267 MobiDBLite consensus disorder prediction 1 146 - -
Vimu9g00374 267 Pfam DEAD/DEAH box helicase 175 260 IPR011545 GO:0003676|GO:0005524
Vimu9g00374 267 PANTHER RNA HELICASE 108 254 - -
Vimu9g00374 267 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00374 Vimu-Chr9 4428485 4439634 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00374 152 252 Eukaryotic Initiation Factors Gene Family AT5G11200 38.614 6.12e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00374 K14805 - gmx:100806018 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00374 9 4428485 4439634 Vimu9g00374 9 4428485 4439634 ECH