Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00354 ATGGATGTAGCTTTTAGGTTACCGCAGTCAAATGTGGTATTAGATGGTTTGGATTCTTGCACTGTATTTGGCGGGAGAGGTTTTTGTTGCGCTTTTCTCGGCAAGTCGAGGACTATTTCGAAGGCTCGTTTTAGTGGAACGAACAAGATAGGTAGTTGGAGTTGTTCGAGAGTAGACTGTTTCGGAGAGTTGAAAGTTTCGAGTGGGAAGAGAAATAAACTTTTTAGGGGGAGTAGAAAAATTTGGACAAAGTGTCAGGGTAACGATTCTTTATCATATGTCAATGGCAATGGGCGGAATGTTGATAGGGTGGAAAGTGCGGATGAGAACTCTGGTTCCAGTGCTGAATCTTGTGAATCTTTGGGTGAAGAAGGGCAAGAAGGGAGGAAAGAAGCTGGGGGTGAAGTAGCGGAGGAGCAAAATGTGGATGAATTGAAAGAACTGCTGCTAAAGGCCAAGAAAGAATTAGAAGCCGCTCGAGAAAACAGCGTTGCATTTGAGGAAAAGGTTAAGAAGATATCAGAGACTGCGATTTTCTTGCAAGACGAAGCAGCAAGTGCTTGGAACAATGTTACTTCTACCCTTGATATCATCCAAGATATTGTGGGTCAAGAATTTGTTGCCAAAGAAGCTGTTCAGAAAGCAACTATGGCCCTTTCTCTGGCTGAGGCAAGGCTTCAAGTAGCCATAGAGTCTTACGAGGCTACAAAAGAAGCTTACGATTTCTCACAAGGTTCTAACAACATTAATGATGATAAAGATATAATGCAGGAAGCGAAGGAACTTTTGGATGCTCAGGAAGATATCAAGGAAGGCCAGACAAATTTATCAAATTGCGAGGATGAGCTGAGAGGCTTGCAATGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAATTTGCATGAAGTTGCAGAACAGGCGCAGCTGAAAGCAGCAAAAGCAGATGAAGATGTTGCAAGCATAATGCTTTTAGCGGAAAAAGCTGTTGCTGCCGAAATTGATGCTGCACAACAGGTGAATGATGCAGAGATTGCATTACAGAAAGCAGAAAAAATTGCCTCTAGTTTTAAAGCTGATACCAAAGACAGTCTACAAGTACAAGAGATTGTAGCTATTCCCGAGGACGAGGAAGTGGGTCAAGGCTTTTCTGGTGATGATGTCGTTAAAAGGGAGGCTGATCTTTCAAATGATGATGAGCTTTTGCTAACCGAAACAAAATCTGACAACAGTAGGCAAAGTTTGGAAGACATGGCACAGTCTGATTATCTGAGTGATCATGAGAACGGACAATTAAGCTTAGACTCTTCTAAAGAAGCTGAAGTTGAAACAGAGAAGTCAAAGAATGTAGTTCAAACAAAAAAGCAGGAAACACAAAAAGATTTGACTAGAGATAATTCATCATTTTTTCCAAAGGCATTATTGAAGAAATCTTCCCGATTTTTTCCCGCATCATTCTTCTCTTTTACTGCCGATGAGACTGATTACACACCTGCATCAGTTTTCCATGGTCTTATGGAGTCTGCACAGAAGCAACTAGCCAAGCTAATTGTTGGGTTATTGTTAATTGGAGCAGGGCTTGTACTCTATAGCAATAGAGCCGAGAGGGGTGCTCAGCTGCTTCAGCAACCAGAAGTCATTGTAACCACTGTTGAAGAAGTTTCTTCAACTGCAAAGCCTCTGGTTAGAAGGCTTCAGGATCTTCCCAGGAGAATTAAGAAAATTATTGCATCATTACCTGATCAAGAGGTGGATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTCCTTGCAAGTGTTGTATTTGTACCAATTTTTCAAAAGATTCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCGTATGGTCTTTCCATTATTCGTCATGTACATGGGACAAAAGCAATAGCCGAGTTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTTTCTGTTGAAAGGCTTAGTTCAATGAAGAAGTATGTCTTTGGATTGGGATCTGCTCAGGTTTTGGTGACTGCTGTAGTTGTTGGCTTGGTAGCTCATTATATTTGTGGTCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGTCTAGCATTATCATCAACTGCTGTTGTTTTGCAAGTGTTACAGGAGAGAGGTGAAAGCACATCACGGCATGGAAGGGCTACGTTCTCGGTTTTACTTTTTCAGGATTTGGCAGTGGTTGTCCTGCTAATACTCATACCTCTAATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCACTTGGTCTGGCCGCTGTTAAGGCATTGGTTGCCATTGCCGCCATAATTGCAGGTGGACGATTGGCATGTTATGACATTTCTTTATCTGACTCTAACTTTTTCTATGTAATTTTGCTCACCCCTCTTTGCAAGCTCCTGCGACCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTCGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGGCTGGACTTTCTATGGCATTGGGGGCATTTTTGGCAGGTTTACTATTGGCAGAAACAGAGTTTTCCTTACAGGTTGAATCTGATATTGCCCCGTACCGTGGCCTTCTTCTGGGTCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTTCAGTCGTTACTGGGACCTTGGGACTTTTGATATTGGGCAAGACTTTGTTGGTTTCTTTAATTGGTAGAATATTTGGTATTTCTCTCATTTCTGCTATTAGAGTTGGCCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGATGTCCTCCTTACTGTTTCTTGTTGTGGGGATTTCAATGGCCCTCACTCCTTGGTTAGCTGCAGGAGGGCAGTTCCTTGCTTCCCGTTTCGAGGTGCATGATGTGCGAAGATTATTACCTGTAGAAAGTGAGACAGACGATTTGCAAAATCACATCATTATTTGTGGATTTGGGCGAGTTGGGCAAATCATCGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGACGTGAGAAGTGATAGAGTGGCAATTGGACGTGCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACATAAGGTTGGAGCTGAAAGGGCAAGTGCCGCTGCAATAACTCTAGATTCACCTGGAGCTAATTATAGAACAGTTTGGGCTTTGAGCAAATACTTCCCAAACGTCAAAACTTTTGTTCGCGCTCACGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACCGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCTGCTGCGGTTCTTGCTCAGGCTAAACTTCCTACATCAGAGATTGCAGCAACCATAAACGAATTCAGATCCCGCCATCTGTCTGAGCTAACTGAACTAACGGAAACAAACGGAAGTTCTTTTGCATATGGATACAATAAATTTGCAACCAAACCCAATTCGTCAGACGATACTCAGTTTTCTGAAGGGAAACCGGCGACATGA 3639 0.4301 MDVAFRLPQSNVVLDGLDSCTVFGGRGFCCAFLGKSRTISKARFSGTNKIGSWSCSRVDCFGELKVSSGKRNKLFRGSRKIWTKCQGNDSLSYVNGNGRNVDRVESADENSGSSAESCESLGEEGQEGRKEAGGEVAEEQNVDELKELLLKAKKELEAARENSVAFEEKVKKISETAIFLQDEAASAWNNVTSTLDIIQDIVGQEFVAKEAVQKATMALSLAEARLQVAIESYEATKEAYDFSQGSNNINDDKDIMQEAKELLDAQEDIKEGQTNLSNCEDELRGLQCRKEELQNEVNNLHEVAEQAQLKAAKADEDVASIMLLAEKAVAAEIDAAQQVNDAEIALQKAEKIASSFKADTKDSLQVQEIVAIPEDEEVGQGFSGDDVVKREADLSNDDELLLTETKSDNSRQSLEDMAQSDYLSDHENGQLSLDSSKEAEVETEKSKNVVQTKKQETQKDLTRDNSSFFPKALLKKSSRFFPASFFSFTADETDYTPASVFHGLMESAQKQLAKLIVGLLLIGAGLVLYSNRAERGAQLLQQPEVIVTTVEEVSSTAKPLVRRLQDLPRRIKKIIASLPDQEVDEEEASLFDMLWLLLASVVFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKALVAIAAIIAGGRLACYDISLSDSNFFYVILLTPLCKLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFSVVTGTLGLLILGKTLLVSLIGRIFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQMSSLLFLVVGISMALTPWLAAGGQFLASRFEVHDVRRLLPVESETDDLQNHIIICGFGRVGQIIAQLLSEQLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERASAAAITLDSPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELTETNGSSFAYGYNKFATKPNSSDDTQFSEGKPAT 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00354 1212 MobiDBLite consensus disorder prediction 431 457 - -
Vimu9g00354 1212 FunFam K(+) efflux antiporter 2 chloroplastic 586 995 - -
Vimu9g00354 1212 Pfam Sodium/hydrogen exchanger family 595 989 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu9g00354 1212 Gene3D - 586 994 IPR038770 -
Vimu9g00354 1212 Coils Coil 135 176 - -
Vimu9g00354 1212 Gene3D - 1017 1181 - -
Vimu9g00354 1212 MobiDBLite consensus disorder prediction 96 139 - -
Vimu9g00354 1212 MobiDBLite consensus disorder prediction 122 139 - -
Vimu9g00354 1212 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 177 1185 - -
Vimu9g00354 1212 Pfam TrkA-N domain 1022 1135 IPR003148 GO:0006813
Vimu9g00354 1212 ProSiteProfiles RCK N-terminal domain profile. 1021 1143 IPR003148 GO:0006813
Vimu9g00354 1212 MobiDBLite consensus disorder prediction 423 457 - -
Vimu9g00354 1212 Coils Coil 262 317 - -
Vimu9g00354 1212 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1018 1159 IPR036291 -
Vimu9g00354 1212 FunFam K(+) efflux antiporter 2 chloroplastic 1017 1181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00354 Vimu-Chr9 4237719 4247511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00354 85 1208 Inorganic Solute Cotransporters AT4G00630 68.877 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00354 K03455 - gmx:100791174 1798.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00354 9 4237719 4247511 Vimu9g00354 9 4237719 4247511 ECH
Vimu6g00466 6 5430236 5441331 Vimu9g00354 9 4237719 4247511 PCT