Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00353 ATGTCTTTCACTGGAACTCTAGACAAATGCAATGCATGCGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGCACTCCTTACCATAAGAACTGCTTCAAATGCAGCCACTGCAAGGGATGTCTCACGATGTCCACATACTCCTCAATGGATGGAGTTCTTTACTGCAAGACACATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTGCTGAGAAACAAAATGAAATAAACAGAACTCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCGCAAAAACGGTCTATCCTCTTGAAAAGGTGACACTGGAAGGGGAATGCTACCACAAGACTTGTTTCAGGTGTGCTCATGGAGGGTGCCCTCTGACACATTCAAGCTATGCTGCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTTCAACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTACTCCAAGCTGCTGCACACAGGAGGACTGGTTCTTCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCACCAGCAGCATCTGAGGAACCTAAAGTAGTGGAAGATGAAGATAAAAATGAAGAACAAAGTGAAGAAAAAAGTGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAAGCTCTTGA 693 0.4416 MSFTGTLDKCNACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGCLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFAKSAEKQNEINRTPSKLSSMFSGTLDKCAVCAKTVYPLEKVTLEGECYHKTCFRCAHGGCPLTHSSYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHRRTGSSTPPEPLFEEPSHPPAASEEPKVVEDEDKNEEQSEEKSEEKEEEEEEESS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00353 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Vimu9g00353 230 Gene3D Cysteine Rich Protein 100 168 - -
Vimu9g00353 230 SMART lim_4 9 61 IPR001781 -
Vimu9g00353 230 SMART lim_4 103 155 IPR001781 -
Vimu9g00353 230 Pfam LIM domain 104 159 IPR001781 -
Vimu9g00353 230 Pfam LIM domain 10 65 IPR001781 -
Vimu9g00353 230 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vimu9g00353 230 Gene3D Cysteine Rich Protein 5 72 - -
Vimu9g00353 230 MobiDBLite consensus disorder prediction 209 230 - -
Vimu9g00353 230 PANTHER OS06G0237300 PROTEIN 6 83 - -
Vimu9g00353 230 MobiDBLite consensus disorder prediction 174 230 - -
Vimu9g00353 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Vimu9g00353 230 Coils Coil 203 230 - -
Vimu9g00353 230 FunFam LIM domain and actin-binding 1 98 168 - -
Vimu9g00353 230 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vimu9g00353 230 FunFam LIM domain and actin-binding 1 4 74 - -
Vimu9g00353 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vimu9g00353 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vimu9g00353 230 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00353 Vimu-Chr9 4223860 4225517 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vimu9g00353 LIM 4.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00353 - K09377 gmx:100800234 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00353 9 4223860 4225517 Vimu9g00353 9 4223860 4225517 ECH
Vimu6g00469 6 5456706 5458821 Vimu9g00353 9 4223860 4225517 PCT