Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00342 ATGGTAAGGAACAAGCCTCCACACAAGGGAAAGGTTCGCCAACGGCGATGTGGTGGTGATGGTGCTCAGAGGATGGGAAGGAAACCCTGTTGTGACAAGATGGGTATGAAGAAGGGTCCTTGGACTGCTGAGGAGGATGAGATTCTTGTCAATTATATCAACAAGAATGGTGGCCATGGAAGTTGGCGTTCTCTTCCCAAGTTAGCAGGTCTTCTTCGTTGTGGCAAGAGTTGTAGGCTAAGATGGACCAACTACCTCAGACCAGATATTAAACGTGGTTCCTTCACTTTTGAGGAAGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAACTTATGGAACACCCATTTGAAGAAACGTCTCATTTGCATGGGCCTAGACCCTCAAACCCACCAGCCACTATCGTCTTCATGCAACCCTGATGGCATGGCCCATGCAGCATCCACCTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGAGAGCCCTATTTGTTCAACAACAACTCCAACAAAACTGACTCTGACTACTTCCTCAGAATGTGGAACTCTGAAGTTGGACAATCTTTTCGTGGTGTGCACAAATCAGACAACAAAGGTAGCTGCCAAAGTCCCATTTCTCTAGGGTCATTGTCTGCTACCACCACCATAGATTTGGCTTCCAACCCTACATGCATTGTGAAAGAGGATTTGGTGTGGGGTGGTAGCAAGAAAATTGCCTCTGATTCATCAAGCTCTAGTGAACTAGAAGAAGACTCATGTGACACTTCATTGCAGCTCTTGTTAGATTTCCCTATAAACAATGACATGAGCTTCTTAGAATGA 912 0.466 MVRNKPPHKGKVRQRRCGGDGAQRMGRKPCCDKMGMKKGPWTAEEDEILVNYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTFEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLSSSCNPDGMAHAASTSTRHMAQWESARLEAEARLSREPYLFNNNSNKTDSDYFLRMWNSEVGQSFRGVHKSDNKGSCQSPISLGSLSATTTIDLASNPTCIVKEDLVWGGSKKIASDSSSSSELEEDSCDTSLQLLLDFPINNDMSFLE 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00342 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Vimu9g00342 303 CDD SANT 94 137 IPR001005 -
Vimu9g00342 303 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Vimu9g00342 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 25 266 - -
Vimu9g00342 303 ProSiteProfiles Myb-like domain profile. 33 86 IPR001005 -
Vimu9g00342 303 CDD SANT 40 86 IPR001005 -
Vimu9g00342 303 Gene3D - 94 141 - -
Vimu9g00342 303 Gene3D - 36 92 - -
Vimu9g00342 303 SUPERFAMILY Homeodomain-like 34 133 IPR009057 -
Vimu9g00342 303 SMART sant 91 139 IPR001005 -
Vimu9g00342 303 SMART sant 37 88 IPR001005 -
Vimu9g00342 303 FunFam Myb transcription factor 35 92 - -
Vimu9g00342 303 MobiDBLite consensus disorder prediction 13 28 - -
Vimu9g00342 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 86 IPR017930 -
Vimu9g00342 303 MobiDBLite consensus disorder prediction 1 28 - -
Vimu9g00342 303 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Vimu9g00342 303 Pfam Myb-like DNA-binding domain 92 137 IPR001005 -
Vimu9g00342 303 FunFam MYB transcription factor 94 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00342 Vimu-Chr9 4146960 4152054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00342 25 303 MYB Transcription Factor Family AT3G61250 61.986 6.48e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu9g00342 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00342 K09422 - gmx:100788528 452.21