Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00331 ATGGATCGAGGGGACCAAATGTTATCTGGCTCTGCATCTTACTACATGCAGAGAGGAATACATGGTGCTGGAACTCAATCTGAACTGCACAACTCGCCTAATATTAGATCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTACCATTGGATCCACATTACCATTGGAGTCTTCAGGAATTTCATCTCCATGTGTCAATGTGAGTGTTCCTTCTGGTGCTGTGCCAGGGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTCGAAAATACGGGCCGGACGGAACTGTGTCGTTGGCATTGACTCCGACACCAGCAAGTCATCCTGGAGCCCTGGCTCAAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATTACCATATCAGTTGGAGAGGACGTTGCCACAAAAATCATGGCCTTTTCTCAGCAGGGTCCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACTCTCCGCCAGCCTTCAACATCAGGTGGCACAGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGATAGTGGTGGCTCCCGCAATCGAACCGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGTGGAGTGCTTGTTGCTGCAAGTCCAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATCAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATCGAGACTGATCATCAGACAGTTCATAATCCAGTTGCAATGAATAGCCTCTCGCCAAATCAAAATCTTACTCCAACCTCATCTATAAGTCCGTGGCCAGTATCACGATCATTGGATATGCGCAACTCTCATATTGACATTGATTTAATGCGCGGGTGA 1020 0.4745 MDRGDQMLSGSASYYMQRGIHGAGTQSELHNSPNIRSLSNPNLPFQSSIGGGGTIGSTLPLESSGISSPCVNVSVPSGAVPGESVKRKRGRPRKYGPDGTVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITISVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLVAASPVQVIVGSFTWGGSKTKIKKKEPSEVAEVAIETDHQTVHNPVAMNSLSPNQNLTPTSSISPWPVSRSLDMRNSHIDIDLMRG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00331 339 ProSiteProfiles PPC domain profile profile. 147 289 IPR005175 -
Vimu9g00331 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 314 IPR039605 GO:0003680
Vimu9g00331 339 FunFam AT-hook motif nuclear-localized protein 1-like 153 284 - -
Vimu9g00331 339 CDD DUF296 152 241 IPR005175 -
Vimu9g00331 339 MobiDBLite consensus disorder prediction 72 136 - -
Vimu9g00331 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 267 IPR005175 -
Vimu9g00331 339 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Vimu9g00331 339 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Vimu9g00331 339 Gene3D - 153 296 - -
Vimu9g00331 339 MobiDBLite consensus disorder prediction 24 56 - -
Vimu9g00331 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00331 Vimu-Chr9 3946787 3951376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00331 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.111 1.61e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00331 - - gmx:100799791 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00331 9 3946787 3951376 Vimu9g00331 9 3946787 3951376 ECH
Vimu6g00493 6 5670541 5676530 Vimu9g00331 9 3946787 3951376 PCT