Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00328 ATGGGTATTCAGTGTTCCAGACTCATGCCATGCTGTGTGGATTCACAAGTTAAGGCATCTGTTATTGAAACTCCAGATGCTGAAATTGAGGATAGTAGTGAGGTCAGTAACTGGCCTACATTCCGGGAATTTACACTCGAGCAACTCAAGAATGCAACATCTGGTTTTGCTGTTGAGAACATTGTATCTGAACATGGAGAGAAGGCTCCCAATGTTGTTTATAAAGGAAAACTGGAGAATCAAATGAGGATTGCGGTTAAGCGGTTTAACAGGAATGCTTGGCCAGATGCTCGGCAGTTTTTGGTAAATTCATCTGCTCCAGTTGGTTTCTTCTCCAACCTTCTTTTAACTGTATATTGTCCTGGTCATGACCTTGCATTGCACAAATGCATTATTTATGAGGAAGCAAGATCAGTCGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTTTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTGGCAAAACACCTTTTCCATTGGGAAACACAACCCATGAAATGGGCAATGCGACTAAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGCCGAGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGGATGGTAATCCCAGGCTTTCAAGTTTTGGTCTTATGAAAAACAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACTCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCAGAGAGTGTAATATATAGCTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATGCGCTCGATGTCATTCGCGGAAGAAACATTCAGATGCTGACAGATTCTTGTTTGGAAGGACAATTTTCTGATGATGATGGAACTGAGTTAGTACGCTTGGCCTCTCGATGTTTACAATATGAACCTAGAGAACGGCCAAATCCAAAGTCATTGGCAGCTGCTTTGGCTCCTCTTCAAAAGGAAACAGAGGTTCCTTCACATGTCTTGATGGGCATCCAGCACAGTACTACTTTTGCCTCATTATCTCCACTTGGTGAAGCATGCTCAAGGAAGGACTTGACTGCCATACATGAAGTTCTGGAAAATATTGGCTATAAAGATGATGAAGGAGTGGCAAATGAGTTATCATTTCAGATGTGGACTGATCAGATGCAGGAGACATTAAATTGCAAGAAAAAGGGGGATGTTGCTTTCCGACAGAAAGATTTTAAACTGGCAATTGAGTGCTATACGCAGTTCATTGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCAAGGCGTAGTATATGTTATCTAATCAATGACATGCCTCAGGAAGCGCTGAACGATGCAATGCAGGTGCAAGTTGTTTCCCCTGTTTGGCACATAGCATCATATCTTCAATCTGTTGCCCTCACTGCACTTGGGATGGAGAATGAAGCTCAAGCAGCACTTAAAGATGGCACAACTCTGGAATCCAAGCGAAGTGCAACTACCAAGCAAAAATGA 1572 0.4275 MGIQCSRLMPCCVDSQVKASVIETPDAEIEDSSEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDARQFLVNSSAPVGFFSNLLLTVYCPGHDLALHKCIIYEEARSVGQLRNQRLANLLGCFCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDVIRGRNIQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLAAALAPLQKETEVPSHVLMGIQHSTTFASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVANELSFQMWTDQMQETLNCKKKGDVAFRQKDFKLAIECYTQFIDAGTMVSPTVYARRSICYLINDMPQEALNDAMQVQVVSPVWHIASYLQSVALTALGMENEAQAALKDGTTLESKRSATTKQK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00328 523 Gene3D Phosphorylase Kinase; domain 1 30 166 - -
Vimu9g00328 523 FunFam probable serine/threonine-protein kinase At5g41260 168 359 - -
Vimu9g00328 523 SUPERFAMILY TPR-like 415 513 IPR011990 GO:0005515
Vimu9g00328 523 ProSiteProfiles Protein kinase domain profile. 59 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00328 523 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 133 517 IPR045845 GO:0004672|GO:0009742
Vimu9g00328 523 Gene3D Tetratricopeptide repeat domain 412 523 IPR011990 GO:0005515
Vimu9g00328 523 Pfam Protein tyrosine and serine/threonine kinase 132 340 IPR001245 GO:0004672|GO:0006468
Vimu9g00328 523 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Vimu9g00328 523 FunFam probable serine/threonine-protein kinase At4g35230 412 521 - -
Vimu9g00328 523 Gene3D Transferase(Phosphotransferase) domain 1 168 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00328 Vimu-Chr9 3902235 3907042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00328 30 345 Glycoside Hydrolase AT3G07070 30.523 1.78e-35 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vimu9g00328 PK_Tyr_Ser-Thr 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00328 K14500 - gmx:100799260 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00328 9 3902235 3907042 Vimu9g00328 9 3902235 3907042 ECH