Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00297 ATGGCTGTGGTGAGTCCTATGCCTGCAACTGCACCACAGATCAATCGTACGAGCAAGCTTCGTGATGTTGGGGTTCCGGGAATCATGACTAGTAGGAGTGAAATTGTGAGTGAGCCCAGTCCAAGTATGGTCAATGATACACTCTATGTTGCTGTCGCAAAAGATGTGAAAGACAGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCTATGATGGGTGCTAAATTTCCTGCAAGTGCACTGAGAGAACAGGGAGTTCAAGATTATCATGAAAGGGAAAGGCAAAAAATTCCAGAGATTATGGATGCCTATCTTTATATCTGTCAAAGAATGGGGGTGAGGGCAGGGAAAGTACTCATTGAAATGGATTGTGTAGAAAAAGGGATTGTAGAGCTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAGCAGCATCTGATAAGAACTATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATCTGAACAAGCTCCAGCTTCTTGTCATATACAGTTTGTCTGCAATGGGTACCTCATACATACAAGTACTGAATTCCAAGGAATAGTGTCACACGGAGATAAGTGTAATTTTGGATATCTTATAATATTATATTTGGTACTGATACAAGTGCTATATCAACTCAGGGATTGCAGATTGGATAGAAGGAACGTAGAGGTTGGATCTCCTTCTGTGATGCAAATAGCAAACTCTGAAGTTGGGCATTCACCTAGCATGGGATCCCCATCCTCAGTGGCAGGGCAAAATCGTTGGAGAAAACCAACTAATCCTGGACAAGAGTTATTTCGTAGAGTTAGGACTATCAATGGTGCACTTCGGAAGAGCATTGGATCTGTTTCTTCTTTAGAAGGGTACTTAACTCCTCAGAGAAAGTTCGGTAAAGAAGCAAGTTCTGATGAGTTTGATGAGCAGTCACGAGGGAGTCCTTCAGTATTCTCAATGTGCTTTGAGAGCTGTTTGGGTGATGCAGAATTGATCCCAGATTTGATTAACAATGGCAGTGAGAATGTATTAGGCTTGTCATTGAATAACTTTTCTCTGGATAACAAGGATCTCCATTCACCATCTCCAAGTGTATTGGATGAAGGAATGGATGATGCTCTCTATGGTCAACTTGAACAGGCAATGGCTGAGGCTTGGAATGCTAGGCAAGATGCATATCAAGAAACTGTTAGGCGCGTGAAAGCAGAAAAAGAAGCCAAGGATGCTATACGCAAGGTTAAAGTCACTGAAAACCTGTATCAAGAAGAGATAAAACTAAGAAAAGAACAAGAGGAAGAAGTCCAGAAAGCAAAGGAAGAACTTGATAATATGAAGACCCAGATAAACAAAGTTAACGAGGAACTTCAACTTGCCTTAGATCAGAAATTATCTCTAGAGAATCAAATTGCATCTACTGAACTTGTTGTGAAGGAGTTGGAGCAGAAGAATATATCTGCTGATGAGTTGTCTCAAAAATACAAGGATGAACTAGATGAGTTGCAAATGCAACTTGATAATGTATTGGGAGAGGCTGAGGAGTTAAGGAGAAAACAAGGGGAATCCTCAAGCATGCACGGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTTAAGATTGGACAAGGTGGATATGGAAGTATATTTAAAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGACAGTGCCCAAGGTCCGGTGGAGTTTCAACAAGAGGTTGAAATACTGAGCAGGTTGAGGCACCCAAATCTTGTGACACTTATAGGATCCTGCCCAGAATCCTGGACTCTTGTGTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAAGATAACACACCTCCATTATCATGGCAAACTCGAATTCGCATAGCTGCAGAACTCTGCTCGGCTCTCATCTTTCTTCAATCAAGTAAACCTCACAGCATAGCACATGGTGACTTAAAACCAGGCAACATTCTCCTAGATGCAAACCTTGTAAGCAAGCTCAGTGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCACTACACAGTTTTGGAGGACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTACTTCTGGTGAACTCACACCAAAGTCAGATGTTTACTCGTTTGGAGTCATTTTATTGAGATTGATCACTGGTAAACCTGCTCTGGGAATAACAAAGGAAGTGCAATATGCATTACATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGATTGGCCAGTTATGCTAGCTGAAGAGCTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAATAGAAAGAACAGACCAGATCTTCATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGACCCACTCAACCGGGTTCTCAAGGAAAATGCCAACCTCCTCCGTATTTTATCTGTCCAATCTCTCTGGAAGTGATGCAAGATCCACAAGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGTGAATGGCTGAAAAGTGGTCGTCACACTTCACCAAGGACAAACTCTAAGTTAGCACATCACAACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCACTGA 2775 0.4202 MAVVSPMPATAPQINRTSKLRDVGVPGIMTSRSEIVSEPSPSMVNDTLYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPMMGAKFPASALREQGVQDYHERERQKIPEIMDAYLYICQRMGVRAGKVLIEMDCVEKGIVELIHQYGIQRLVMGAASDKNYSRRMISLKSKKAIYVSEQAPASCHIQFVCNGYLIHTSTEFQGIVSHGDKCNFGYLIILYLVLIQVLYQLRDCRLDRRNVEVGSPSVMQIANSEVGHSPSMGSPSSVAGQNRWRKPTNPGQELFRRVRTINGALRKSIGSVSSLEGYLTPQRKFGKEASSDEFDEQSRGSPSVFSMCFESCLGDAELIPDLINNGSENVLGLSLNNFSLDNKDLHSPSPSVLDEGMDDALYGQLEQAMAEAWNARQDAYQETVRRVKAEKEAKDAIRKVKVTENLYQEEIKLRKEQEEEVQKAKEELDNMKTQINKVNEELQLALDQKLSLENQIASTELVVKELEQKNISADELSQKYKDELDELQMQLDNVLGEAEELRRKQGESSSMHGLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSAQGPVEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDANLVSKLSDFGICRILSCQEGSSSSTTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGVILLRLITGKPALGITKEVQYALHSRKLKSILDPLAGDWPVMLAEELVRLALRCCEMNRKNRPDLHPDVWRILEPMRASCGPTQPGSQGKCQPPPYFICPISLEVMQDPQVAADGFTYEAEAIREWLKSGRHTSPRTNSKLAHHNLIPNHSLRHAIQDWLQTH 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00297 924 Gene3D Phosphorylase Kinase; domain 1 539 641 - -
Vimu9g00297 924 ProSiteProfiles U-box domain profile. 853 924 IPR003613 GO:0004842|GO:0016567
Vimu9g00297 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 852 924 IPR013083 -
Vimu9g00297 924 Gene3D Transferase(Phosphotransferase) domain 1 642 843 - -
Vimu9g00297 924 Pfam U-box domain 855 924 IPR003613 GO:0004842|GO:0016567
Vimu9g00297 924 SMART Ubox_2 857 920 IPR003613 GO:0004842|GO:0016567
Vimu9g00297 924 MobiDBLite consensus disorder prediction 262 283 - -
Vimu9g00297 924 PANTHER OS02G0152300 PROTEIN 48 919 - -
Vimu9g00297 924 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 68 171 - -
Vimu9g00297 924 Coils Coil 407 541 - -
Vimu9g00297 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Vimu9g00297 924 ProSiteProfiles Protein kinase domain profile. 569 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00297 924 CDD STK_N 47 200 - -
Vimu9g00297 924 ProSitePatterns Protein kinases ATP-binding region signature. 575 596 IPR017441 GO:0005524
Vimu9g00297 924 CDD RING-Ubox_WDSUB1-like 855 910 - -
Vimu9g00297 924 SMART serkin_6 569 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00297 924 SUPERFAMILY RING/U-box 846 924 - -
Vimu9g00297 924 SUPERFAMILY Protein kinase-like (PK-like) 544 827 IPR011009 -
Vimu9g00297 924 FunFam receptor-like protein kinase FERONIA 534 641 - -
Vimu9g00297 924 Pfam Protein kinase domain 573 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00297 Vimu-Chr9 3605750 3610542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00297 1 924 U-box Gene Family AT2G45910 46.882 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu9g00297 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00297 - - var:108321203 1662.51