Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00296 ATGGTGCGTATCACGCCTCATTATTTTGCAGATTCAGAATTTCTACTATCCGTGTTTCGTCTCAGCTTCTGGAAAGGCGAAGTTTTGATCTGTGTCACCCATTTTGGTTTTGGTGTTGAGTTTTTACATTTGGCGTTTGTTAAGGCTCAGAAATCAAGGGCCTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGAGCCAGGATTCGGTTGATTAACCAGGATAAGAACAAGTACAACACACCAAAGTATCGCTTTGTGACTAACAAGGACATCATTGCCCAAATAACATCTGCTACCATTGCTGGTGATAATGTTCTTGCTGCAGCATATGCACATGAGCTGCCACGCTATGGTCTCGAAGTGGGCCTTACAAACTATGCCGCAGCTTATTGCACTGGACTCTTGTTGGCCCGTCGAGTGCTTAAGAAGCTTGAAATGGATGAAGAGTATGAAGGAAATGTAGAGGCCACCGGAGAGGATTATTCGGTGGAACCAGCCGACACCAGGAGACCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAAGACCACAACAGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATCCCTCATAGTGATAAAAGGTTTGCTGGCTTTGATAAGGATAAGAAGGAGCTTGATGCTGAGATTCATCGCAAATATGTCTTTGGTGGACATGTTGCTGCTTATATGAAGACATTGAATGAGGATGAGCCAGAAAAATACCAGTCACACTTTAGTGATTATATCAAGCGGGGAATAGAGCCTGATGGTCTGGAAGATCTGTATAAGAAGGTTCATGCTGCCATCAGAGCTGACCCTACTTTCAAGAAATCCGAGAAACAGGCACCAAAGGAGCACAAGAGAATATTTGCGTCTTTGTGCAGGTACAATCTGAAGAAACTCACTTATGAGGAGAGAAAGGCTAAATTGGTTGCACGCTTGCAGGCTCTCAACTCTGCTGCCGGTGATGATGATGAGGATGATGAGTGA 1041 0.4457 MVRITPHYFADSEFLLSVFRLSFWKGEVLICVTHFGFGVEFLHLAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVTNKDIIAQITSATIAGDNVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKDKKELDAEIHRKYVFGGHVAAYMKTLNEDEPEKYQSHFSDYIKRGIEPDGLEDLYKKVHAAIRADPTFKKSEKQAPKEHKRIFASLCRYNLKKLTYEERKAKLVARLQALNSAAGDDDEDDE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00296 346 Pfam Ribosomal L18 C-terminal region 275 335 IPR025607 -
Vimu9g00296 346 CDD Ribosomal_L18_L5e 84 210 - -
Vimu9g00296 346 Gene3D - 44 338 - -
Vimu9g00296 346 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 57 215 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00296 346 SUPERFAMILY Translational machinery components 54 292 - -
Vimu9g00296 346 Hamap 50S ribosomal protein L18 [rplR]. 57 286 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00296 346 FunFam 60S ribosomal protein L5 44 338 - -
Vimu9g00296 346 PRINTS Ribosomal protein L5 signature 246 266 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00296 346 PRINTS Ribosomal protein L5 signature 204 223 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00296 346 PRINTS Ribosomal protein L5 signature 124 144 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00296 346 PRINTS Ribosomal protein L5 signature 184 203 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00296 346 PRINTS Ribosomal protein L5 signature 63 82 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00296 346 PANTHER RIBOSOMAL PROTEIN L5-RELATED 45 337 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00296 Vimu-Chr9 3596726 3599091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00296 44 339 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 78.261 1.40e-173 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00296 K02932 - gmx:100805868 518.464