Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00295 ATGTTAAAGGCGTTTGTTAAGGCTCAGAAATCAAGGGCCTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGAGCCAGGATTCGGTTGATTAACCAGGATAAGAACAAGTACAACACACCAAAATATCGCTTTGTGGTTCGATTTGTATCCTACTGTTATGGAGAGTTTGTTGTATGTGCTCAAATTGCTGACATCATTGCCCAAATAACATCAGCTACCATTGCTGGTGATAATGTTCTTGCTGCAGCATACGCACATGAGCTGCCACGCTATGGTCTCGAAGTGGGCCTTACAAACTATGCCGCAGCTTATTGCACTGGACTCTTGTTGGCCCGTCGAGTGCTTAAGAAGCTTGAAATGGATGAAGAGTATGAAGGAAATGTAGAGGCCACCGGAGAGGATTATTCGGTGGAACCAGCCGACACCAGGAGACCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAAGACCACAACAGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATCCCTCATAGTGATAAAAGGTTTGCTGGCTTTGATAAGGATAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTCTTTGGTGGACATGTTGCTGCTTATATGAAGACATTGAATGAGGATGAGCCAGAGAAATACCAGTCACACTTCAGTGATTACATCAAGCGGGGAATAGAGCCTGATGGTCTGGAAGATCTGTATAAGAAGGTTCATGCTGCCATCAGAGCTGACCCTACTTTCAAGAAATCCGAGAAACAGGCACCAAAGGAGCACAAGAGGTACAATCTTAAGAAACTCACTTATGAGGAGAGAAAGGCTAAATTGGTTGCACGGTTGCAGGCTCTCAACTCTGCTGCTGGTGATGATGATGAGGATGATGAGAAAGCGAGAGTGATGGAGGGAAGAATGAGCAAGGTCGAGGGAAAGATGGAGCATCTGGAGTTGGTGGTAGATGGGTTGAAGGCAGAAACGGCAGCGAATCGCCAAGAATCGATCGCGATGTGCAAAGACATTCAAGAATTGATACGGCTGATGGGAACGCGCAACAGGCAAGGGGAGTTAGGCTCTGATAGGAGTCAGGAGTCAGTGAATAATAACGAAGGTAACCCGCACGGGAACGACGGAAGGGGAAAGGAGGAAGAGCGATCAGACAACGACTCTAATTGGAGACGACAAATGGAGTTGCCCATATTCGAGGGGCCCGATCCTCTGAATTGGATCAACAGGGCAGGGAAGTTCTTTGAGATTCAAAAGGTAGCGGAGGAGAAGCATGGAAGGGAGCGCCGGATATTGGTTCCGGTTTTGGAAAGACAAGGCGAGAATTCGAACCTGGGAGGGGTTGAAAGAGGCATTGCTGATTCGATTCGAGAGCCGTTATTGTGGGGGAATTTTCAAGAGAATGGCGAGAATATGACAAACCACCACCGTGGAGGAATACCGGGTCTTCGGGAGGAGTTGCGGTGTCAGATGAGGCCCTATGACCCTTGCAACTTGATGACGGCGATGAAGATCGCATGCGATGTGGGGGAGGCTCTTCGTGGCCTAGGATTGATGGGATGGACGGCGGATAAAACATCTCCCTCATGGGGGCGAACGACAGGAGGAGGAGCAGTAATGGCTAGAATCGATCCGCCAGGGAGCAATTCCGGAAGGGCCACGCCGGCGGAAAAGGTGGGGGTGGCGAGACGAGAAGGGCCGATCGGAAACAGGCCGGCGAGAAGCGGAAATTCTGGAGGGGGAGATAACCGGGGATGGATGACTCGTAACCTACCTTACCTTGAGTTTTTGAAGTGCCGGGAAGAAGGGCGATGTTATCGCTGTAGGGGACCTTTTAGCCCCGGCCACCAATGTCCCGAGAAGAGCTTACGGGTGGTCTTGCTGGCGAAAGATGAAGATGAGGGAGAGGAGGGGGCAGAGACCGAGACGGAAGCCCCATGCATGAAGTTCTCAGCGTTCTCCGCCGGAGGAGTGGGGGAGAGAGACATTTTGATACTTGTCGACAGTGGCGCAAGCCACAACTTCATAAGTAAGAGGCTGGTGGACGAGATGAAGCTCGAACAGGAGGATACCCTTCCCTATTTGGTGAGGCTGGGGGACGGCCACAAGAAGGGAACTAGAGGATGTTGTCCGAAGATGGTCGTCGACATGGGGGGGGTGTTTGAGATCGAAGAAAGGTTTTACTTATTCGAGTTAGGCGGGGTAGACATGATCCTCGGAGTAGAATGGTTGGCCAAGTTGGGGGAGATCACTCTCAAGTGGAAGGAGTCCACCATGGCGTTCGTCCACGACAAAAGAAAAGTGGTCATCAAGGGTGACCCAACCTTGGAGAGGAGGGTGGTCGAACCAAGGAAGCTGTTAAAGCTGAGCGACATATACATGTGGGCTTTAGTTTGGAGTTTGGAGGGCAAGGTGGAGAGTAGGGAGAAGATACGAGAAGCAGAGCTTAATGAAGGGCAGCAAAAGGACTTAGAGGGAATTATAGAGAAATAG 2547 0.501 MLKAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVSYCYGEFVVCAQIADIIAQITSATIAGDNVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKDKKELDAEVHRKYVFGGHVAAYMKTLNEDEPEKYQSHFSDYIKRGIEPDGLEDLYKKVHAAIRADPTFKKSEKQAPKEHKRYNLKKLTYEERKAKLVARLQALNSAAGDDDEDDEKARVMEGRMSKVEGKMEHLELVVDGLKAETAANRQESIAMCKDIQELIRLMGTRNRQGELGSDRSQESVNNNEGNPHGNDGRGKEEERSDNDSNWRRQMELPIFEGPDPLNWINRAGKFFEIQKVAEEKHGRERRILVPVLERQGENSNLGGVERGIADSIREPLLWGNFQENGENMTNHHRGGIPGLREELRCQMRPYDPCNLMTAMKIACDVGEALRGLGLMGWTADKTSPSWGRTTGGGAVMARIDPPGSNSGRATPAEKVGVARREGPIGNRPARSGNSGGGDNRGWMTRNLPYLEFLKCREEGRCYRCRGPFSPGHQCPEKSLRVVLLAKDEDEGEEGAETETEAPCMKFSAFSAGGVGERDILILVDSGASHNFISKRLVDEMKLEQEDTLPYLVRLGDGHKKGTRGCCPKMVVDMGGVFEIEERFYLFELGGVDMILGVEWLAKLGEITLKWKESTMAFVHDKRKVVIKGDPTLERRVVEPRKLLKLSDIYMWALVWSLEGKVESREKIREAELNEGQQKDLEGIIEK 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00295 848 Coils Coil 322 342 - -
Vimu9g00295 848 MobiDBLite consensus disorder prediction 391 407 - -
Vimu9g00295 848 MobiDBLite consensus disorder prediction 371 390 - -
Vimu9g00295 848 CDD Ribosomal_L18_L5e 43 184 - -
Vimu9g00295 848 Gene3D Acid Proteases 671 788 IPR021109 -
Vimu9g00295 848 MobiDBLite consensus disorder prediction 368 407 - -
Vimu9g00295 848 Gene3D - 3 305 - -
Vimu9g00295 848 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 16 189 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00295 848 SUPERFAMILY Acid proteases 676 766 IPR021109 -
Vimu9g00295 848 MobiDBLite consensus disorder prediction 583 602 - -
Vimu9g00295 848 FunFam 60S ribosomal protein L5 3 305 - -
Vimu9g00295 848 CDD retropepsin_like 674 763 - -
Vimu9g00295 848 PANTHER RIBOSOMAL PROTEIN L5-RELATED 4 304 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00295 848 Pfam Retroviral aspartyl protease 682 765 - -
Vimu9g00295 848 PRINTS Ribosomal protein L5 signature 178 197 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00295 848 PRINTS Ribosomal protein L5 signature 22 41 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00295 848 PRINTS Ribosomal protein L5 signature 45 64 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00295 848 PRINTS Ribosomal protein L5 signature 158 177 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00295 848 PRINTS Ribosomal protein L5 signature 220 240 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu9g00295 848 Pfam Ribosomal L18 C-terminal region 249 302 IPR025607 -
Vimu9g00295 848 SUPERFAMILY Translational machinery components 13 266 - -
Vimu9g00295 848 Hamap 50S ribosomal protein L18 [rplR]. 16 260 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00295 Vimu-Chr9 3585751 3590430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00295 4 306 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 76.898 1.46e-167 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00295 K02932 - gmx:100805868 518.85