Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00283 ATGTCCATGGCAGGGCGGTTGCAGTTATACGACGGTGTTCGCGAAGAAAATAGTGGTGAAATATTTGGAGGCTCGAACGACGATTCTTTGTGCCATTTCGAGAGGTTGTTTGCAGAGTTCTTTAGTGAGATCTGTGCGTGTAATTGCGTTTTGCATTATCCTCCAATGCTGTCTGATGGGCAGGACGTGGATTTGTATAAGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAAAGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAATGAGTGTTGGGTCCTCTGTTGAGTTGGTATACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCCGAATTTGGTGTGGTGGATGATAGGGATAAGTTTGGGAGGCGGTTAATGGAGTTGCAGGCTGAGGTGGAAGGGTTGCTTTCCGGTTGTGCGGATGAGAGGGTGGTTTTGGTTGGGGAGGATGTCGAGGGTGGTCTTGATGAAGATGATCACAACTCTGATGGGAGGGAGTTATCCGGTGCTAATGGGGTGAAAAGTAACGGTGATGAAGGAGGTGAACATAAACAATGTGATGATTCGGAGATGCCGGACAATGACATGGATGAGGCGGTTCTTGGAAACTCGGATAAGGGAAATGATTTAATGGGAGGGGAGGAAGGGTTTGATGAAGGGAAAATGCCTGAAGAGCAGGCTGTGGATATATCGGATGGGGCTAATAATAATGGGACTGGAGTGGTGAGCGGAGGCAAGAAGTGTGACGACAGTGATGATAAGGGCTTGGTGTTGGATGCATCTGGTGGTAATAGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTTGGATTCATCTAGTGATGATTGTGATAGTCCTAGTCGTAAGAGAATGCGAGAGTCTGCAATGGATATGCTGAGCTGGGTTACTGGTGTTGCAAAGAATCCTGGTGATCCTGAAGTTGGTTCAATCCCTGAAAAGTCAAAGTGGAAGTCTTATACTAGTCAGGAGGTGTGGAAACAGGTGCTGTTGTTTCGGGAAGCTACGTTTTACAGAAGAGGTTCTGAGCAAAGCAATGAACAACGTAGTTGGCAGAATCAGAAGATGCATCCGTGCTTGTATGAAGAACAAGTTGGGACAAACTACAATCTCAGAGACAGGTTAAAATGTGACAAGAAGCTTTTATTTGGCAAATATGCATCTCTGCGAAGCTCTTCTGATTCATCTGTGGCAACTGAGAACAGAACACCTAATTCTCACGCTGAAGATCAATCTGAGTTGCTTGATTCCCCAGATGCAAATGCAGGTCTTGACAAATGTGCAACAGTACGCATTCCTTTGGGGACAAATCATCAAGCCGAAATACCAGAATGGACTGGTGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAGTATGGCCACAGGAAACAGTAAATTCGAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCCCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTCCACATTTCAGAGAAAAGGGCCAAAGTTAAGCTGGAATTGGGTGATGCATTTTACGACTGGGACTTTGATCGGGTTGGTGAAGAAGTTAGGCTAATGTGGACGAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTTCGGTCAAACCCTCCATCACTTGAGAAATATTACTGGGACTATATTTTTAGGGCATTTCCTGATAAAAGCAGGGCAGAATTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAGCGCAGAGGATACCAGAATAGGCACACTCCCGATGACATTGATAGTGATGACAATGATGACGAAGCTGGACCATTAAGGAATGTTTTTGGACCTCAGATACAGAATTCTGGACATGAGATGCAGAGTTCGCGAGGCTCCATCTTATTAACCCCCAAAAAGACACGTAAAAAGGGAAAATAG 2013 0.4536 MSMAGRLQLYDGVREENSGEIFGGSNDDSLCHFERLFAEFFSEICACNCVLHYPPMLSDGQDVDLYKLFLVVRGKGGYDAVCKGKLWDSVGEESGMGMSVGSSVELVYSRYLSALDSWMKKVAESKVSPEFGVVDDRDKFGRRLMELQAEVEGLLSGCADERVVLVGEDVEGGLDEDDHNSDGRELSGANGVKSNGDEGGEHKQCDDSEMPDNDMDEAVLGNSDKGNDLMGGEEGFDEGKMPEEQAVDISDGANNNGTGVVSGGKKCDDSDDKGLVLDASGGNSDGDSSGHKRKREGSVLDSSSDDCDSPSRKRMRESAMDMLSWVTGVAKNPGDPEVGSIPEKSKWKSYTSQEVWKQVLLFREATFYRRGSEQSNEQRSWQNQKMHPCLYEEQVGTNYNLRDRLKCDKKLLFGKYASLRSSSDSSVATENRTPNSHAEDQSELLDSPDANAGLDKCATVRIPLGTNHQAEIPEWTGVTSESDSKWLGTRVWPQETVNSRLIERDPIGKGRQGSCGCPEEGSVECVRFHISEKRAKVKLELGDAFYDWDFDRVGEEVRLMWTKEEEKKFEDVVRSNPPSLEKYYWDYIFRAFPDKSRAELVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDDEAGPLRNVFGPQIQNSGHEMQSSRGSILLTPKKTRKKGK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00283 670 MobiDBLite consensus disorder prediction 287 316 - -
Vimu9g00283 670 SMART ELM2_2 462 512 IPR000949 -
Vimu9g00283 670 SUPERFAMILY ARID-like 34 123 IPR036431 GO:0003677
Vimu9g00283 670 MobiDBLite consensus disorder prediction 618 670 - -
Vimu9g00283 670 MobiDBLite consensus disorder prediction 230 245 - -
Vimu9g00283 670 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 26 665 - -
Vimu9g00283 670 MobiDBLite consensus disorder prediction 172 316 - -
Vimu9g00283 670 MobiDBLite consensus disorder prediction 640 660 - -
Vimu9g00283 670 MobiDBLite consensus disorder prediction 423 448 - -
Vimu9g00283 670 Gene3D - 28 129 IPR036431 GO:0003677
Vimu9g00283 670 Pfam ARID/BRIGHT DNA binding domain 52 114 IPR001606 GO:0003677
Vimu9g00283 670 CDD ARID 33 116 - -
Vimu9g00283 670 CDD SANT 561 608 IPR001005 -
Vimu9g00283 670 SMART bright_3 35 121 IPR001606 GO:0003677
Vimu9g00283 670 SMART ARID_2 24 116 - -
Vimu9g00283 670 ProSiteProfiles ARID domain profile. 27 120 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00283 Vimu-Chr9 3432856 3436316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu9g00283 ARID 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00283 - - pvu:PHAVU_010G100300g 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00557 6 6744997 6748450 Vimu9g00283 9 3432856 3436316 PCT