Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00282 ATGTTCCTCTTTTTTCTTCTCTTCGTTCTCATTCTCCAGACTTCCTCCTCCTCCGCCACCATCATTCTCCAAGGCAACGCCACTCTGCAAAGCCCCAACAACACTTTCCAACTTGGCTTCTTCAATTTCTTCCCAGGCCCGGGCCCGGGCCCGCCTAAATTCTACCTCGCCATCCGCCGCACCTCTTTGCCCAGCCCCAATACCATCTGGGTCGCCAACCGCCTCCACCCCTCCCCCTCCCAAGCCGCTTCATCCCTTGAACTCACCCCAACCGGTCAGTTACTCCTAACCCACTTCAACACCACTCTCTGGACCGCCGCCTCCGCCGCCACCGCCAACCTCACCCTCAAGCTTCTCGATTCCGGAAACCTCGTCCTCCTTACTTCCGACGGCGTCGTTTCATGGCAGAGCTTCGATTCCCCCTCGGACACGTGGCTCCCCGGCATGAACCTCACGCGCTTCAACTCCCTCACCTCTTGGCGCACGGAGACGGACCCTTCCCCGGGGCTTTACACCCTGCGGTTGAAACCATCCTTCTACGGCGAGTTCGAGCTCGTCTTCAACGAGACCGTTTCGTACTGGTCCACCGGGAACTGGAGCAATGGGACATTCCTCAACATCCCAGAGATGACCATCCCCTACCTCTACGCCTTTCACTTCGCCGCGCCGTTCTCCCCCGCCGCGGCCTTCGGTTTCTCCGAACGCGCAATCGAGACGAGCTCCCGACCGCCGACGATGTTCCGCCTGGAGCCCTTCGGGCAGGTCAAGCAGTACTCGTGGAACAGCCAATCGGGGTCCTGGCAGATGTTTTGGTTCAAGCCGGAGAGTGTGTGCCAGGTTCGGGGAATCTGCGGGGGGTTCGGGGTTTGCACTGGGGACACATCCAAATTCTGTGAGTGTGTGAGTGGGTTTGAGCCTTTGGATGGTCATGGGTGGGGTTCTGGTGATTACTCTCAAGGTTGTCACCGTGTGGACGCGGGGTGTGATGGGGGTGATGGGTTTGAAGATCTTGGTGCTGTGAGGTTTGGATTCGGTAATGTGAGTCTGGTTAAGGGGAAATCTAGAAGCTTTTGCGAGCGCGAGTGCTTGCGTGATTGTGGGTGCGTTGGGTTGAGTTTCGAAAAGCAGAGTGGGTTATGCAAGAAATTTTATGGTTCGCTTTCGGATTTTCAGAATTTAACCGCCGATGGTGAGAGTGAGGTTTTGCATGTTAGGGTTCCGAGCGGGGGATCTGGGAGGAAGGTGTTTGATTGGAAGGTTTTGAGTGGGGTTGTTATCGGGTCGGTTGCGGTTTTGGGGGTGGTGGTGGTGACATTGTTGGTGATGGTGAAGAGGAGGGTGGAGGGGAAGAAAATGGACGAGGATGAGGAAGATGGGTTTGTGGGTATGTTGAATTTGCGTGTGTTTTCTTACAAGGAACTTCAGTTGGCGACTCGGGGGTTTTCAGAGAAAATTGGGCACGGAGGGTTTGGGACGGTGTTTCAGGGGGAGTTGAGTGATGCTTCCGTTGTGGCCGTGAAGAGGTTGGAGAGGCCAGGGAGTGGGGAGAAGGAGTTCAGGGCGGAGGTCTCTACGATTGGGAATATTCAACACGTGAATCTCGTGCGGCTCAGAGGGTTTTGCTCTGAGAATTCTCACCGGCTTCTGGTTTATGAGTATATGCAGAACGGTGCTCTCAGTGTTTATTTGAGGAAGGAAGGGCCTAGTCTGAGTTGGGATGTTAGGTTCAGGGTGGCCGTTGGCACTGCTAAGGGGATTGCTTATTTACACGAGGAATGTAGATGTTGCATCATACATTGTGATATAAAGCCAGAGAACATTCTTTTGGACGGTGATTTCACAGCCAAGGTTTCTGATTTTGGGTTAGCAAAGCTCATTGGGAGGGACTTCAGTAGGGTGTTGGCGACTATGAGGGGAACGTGGGGGTATGTTGCACCCGAGTGGATTTCTGGTGTGGCAATTACAACCAAGGCAGATGTTTACAGCTATGGAATGACAATGCTGGAGCTGATCGGCGGTCGGAGGAACGTGGAGGCACTGCCATCTGGCGGTGGAGAGAGTGGTACTGAAAGTGGAGGGAAGTGGTTCTTCCCACCATGGGCAGCGCAGCAGATCATAGAGGGAAATTTTGGTGAAGTGATTGATAAGAGACTTGGTAATGTGTATAACATTGAGGAGGCTAGAAGGGTTGCTTTGGTGGCAGTTTGGTGTATTCAAGATGATGAAGCAATGAGACCTACAATGGGTATGGTGGTGAAGATGTTGGAAGGGTTGGTGGAGGTAAGTGTTCCTCCACCTCCAAAGTTGCTTCAAGCTCTGGTTACTGGGGATTCATTTCATGGGGTGAAGGCTAATTCAGGCAATGGTGTGTCTACTGGCGGAAGCTTATCAGATGGCAACTTGGAAGTTTCAACTGCTGATTCTGAATCATATACAGGGAATGTTTTTTCTCCATTAGATGTCAATGCCAATGTCAGTGTTCGATAA 2487 0.5283 MFLFFLLFVLILQTSSSSATIILQGNATLQSPNNTFQLGFFNFFPGPGPGPPKFYLAIRRTSLPSPNTIWVANRLHPSPSQAASSLELTPTGQLLLTHFNTTLWTAASAATANLTLKLLDSGNLVLLTSDGVVSWQSFDSPSDTWLPGMNLTRFNSLTSWRTETDPSPGLYTLRLKPSFYGEFELVFNETVSYWSTGNWSNGTFLNIPEMTIPYLYAFHFAAPFSPAAAFGFSERAIETSSRPPTMFRLEPFGQVKQYSWNSQSGSWQMFWFKPESVCQVRGICGGFGVCTGDTSKFCECVSGFEPLDGHGWGSGDYSQGCHRVDAGCDGGDGFEDLGAVRFGFGNVSLVKGKSRSFCERECLRDCGCVGLSFEKQSGLCKKFYGSLSDFQNLTADGESEVLHVRVPSGGSGRKVFDWKVLSGVVIGSVAVLGVVVVTLLVMVKRRVEGKKMDEDEEDGFVGMLNLRVFSYKELQLATRGFSEKIGHGGFGTVFQGELSDASVVAVKRLERPGSGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSVYLRKEGPSLSWDVRFRVAVGTAKGIAYLHEECRCCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTMLELIGGRRNVEALPSGGGESGTESGGKWFFPPWAAQQIIEGNFGEVIDKRLGNVYNIEEARRVALVAVWCIQDDEAMRPTMGMVVKMLEGLVEVSVPPPPKLLQALVTGDSFHGVKANSGNGVSTGGSLSDGNLEVSTADSESYTGNVFSPLDVNANVSVR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00282 828 Gene3D Transferase(Phosphotransferase) domain 1 554 763 - -
Vimu9g00282 828 FunFam S-receptor-like kinase 5 554 764 - -
Vimu9g00282 828 SMART serkin_6 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00282 828 SUPERFAMILY Protein kinase-like (PK-like) 462 756 IPR011009 -
Vimu9g00282 828 SMART blect_4 20 141 IPR001480 -
Vimu9g00282 828 CDD PAN_AP_plant 324 407 - -
Vimu9g00282 828 Gene3D - 14 138 IPR036426 -
Vimu9g00282 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 199 IPR036426 -
Vimu9g00282 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Vimu9g00282 828 Gene3D Phosphorylase Kinase; domain 1 443 553 - -
Vimu9g00282 828 CDD STKc_IRAK 485 758 - -
Vimu9g00282 828 Pfam S-locus glycoprotein domain 194 306 IPR000858 GO:0048544
Vimu9g00282 828 PANTHER OS07G0415500 PROTEIN 3 768 - -
Vimu9g00282 828 Pfam D-mannose binding lectin 68 153 IPR001480 -
Vimu9g00282 828 FunFam Receptor-like protein kinase 4 441 553 - -
Vimu9g00282 828 ProSiteProfiles PAN/Apple domain profile. 328 406 IPR003609 -
Vimu9g00282 828 ProSiteProfiles Protein kinase domain profile. 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00282 828 Pfam Protein kinase domain 482 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00282 828 ProSiteProfiles Bulb-type lectin domain profile. 14 139 IPR001480 -
Vimu9g00282 828 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Vimu9g00282 828 PIRSF SRK 1 810 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00282 Vimu-Chr9 3405347 3407833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00282 469 765 Receptor kinase-like Gene Family AT5G20050 47.419 8.22e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu9g00282 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00282 - - gmx:100778917 1313.52