Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00277 ATGACTTCTCCATATCCCCCTCGCCGGCGATCCGGCTCCGACTACAGCAGAACGCCGGGAAGGGTGCCCCCTTCTCCGGGATACGCCTCGTCCGAGCTAAGCACCTCCACAATCTCCGAGCGCCAGAACCCTGTCGTCGCCGCCGCAAGGTCCTTCACCGGAATGTTCGCTGCGTGCTTCGCCCCCCCGGAATCCGACAACTCCAGGAGCCTCGGGGATTCCGAGGAATTTAAGTCTTCTTCCACTGCATCGAATGGCTCAAGAGCTGGTTCAAGAGCTGGTAGTCAGAGAGGGCGTAACTCAAATGGAGGTATGAACATCAGTTCATACAACATAGTACAAAGGAAAGAACCTGGCATTGTGAAGTTCACCATGGAGGAAATCTTCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTGCTGTGTACAAGGCAAAACTCTTGGATGGGACTGTTGTTGCAGTAAAGCGCGCGAAGAAGAGTCTATATGAGAAACATTTGGGAGTGGAGTTTCAGAGCGAGATCCAAACACTATCCAAGGTGGAACATTTGAACTTGGTCAAGTTGTATGGATATTTGGACCAAGGTGATGAAAGGATCATTGTTGTTGAGTATGTTCCAAATGGAACCCTCAGAGAACATTTAGATTGTGAGTTTCTCAAGTCTTTTAGCTATTGTCTGTTTCTTGACCAATGGACTGTTACAGGCATTCATGGGAGCGTTCTGGACCTTGCTGCACGTTTGGATGTAGCAATTGATGTTGCTCATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCAAACATTCTTCTCACTGAAAATTTTCGAGCTAAAGTAGCAGACTTTGGTTTTGCTAGACAAGCAGCAGACAGTGACTCTGGCATGACACATGTTTCCACCCAAGTCAAAGGAACAGCTGGTTACTTGGATCCTGAATACCTGAAAACTTATCAACTAACTGAGAAAAGTGATGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGCAGACGCCCCATTGAACCAAAATTTGAACTCAAGGAGCGAATAACAGCAAAATGGGCCATGAAGAGGTTCATGGAGGACGATGCTATCTCAGTCTTGGACCCAAGACTGGATCAGACTGCTGCAAACACTTTGGCACTGCATAAGATTCTGGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAACAGGCCTAGCATGAAAAGATGTGCCGAAATCCTTTGGTCCATCCGCAAGGATTTCAGAGAGCAGTTATCAGCTTCAAACTTCCGCTCATTTTCCACTTCTTCCCAAAGGAGCAGCTCACTGAGAGAGTGA 1383 0.4642 MTSPYPPRRRSGSDYSRTPGRVPPSPGYASSELSTSTISERQNPVVAAARSFTGMFAACFAPPESDNSRSLGDSEEFKSSSTASNGSRAGSRAGSQRGRNSNGGMNISSYNIVQRKEPGIVKFTMEEIFQVTRNFSPSFKIGQGGFGAVYKAKLLDGTVVAVKRAKKSLYEKHLGVEFQSEIQTLSKVEHLNLVKLYGYLDQGDERIIVVEYVPNGTLREHLDCEFLKSFSYCLFLDQWTVTGIHGSVLDLAARLDVAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAADSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITAKWAMKRFMEDDAISVLDPRLDQTAANTLALHKILELALQCLAPRRQNRPSMKRCAEILWSIRKDFREQLSASNFRSFSTSSQRSSSLRE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00277 460 MobiDBLite consensus disorder prediction 64 109 - -
Vimu9g00277 460 Gene3D Phosphorylase Kinase; domain 1 97 212 - -
Vimu9g00277 460 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 94 212 - -
Vimu9g00277 460 MobiDBLite consensus disorder prediction 74 109 - -
Vimu9g00277 460 ProSiteProfiles Protein kinase domain profile. 135 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00277 460 Pfam Protein tyrosine and serine/threonine kinase 140 429 IPR001245 GO:0004672|GO:0006468
Vimu9g00277 460 PANTHER OS01G0750732 PROTEIN 52 446 - -
Vimu9g00277 460 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 213 443 - -
Vimu9g00277 460 SUPERFAMILY Protein kinase-like (PK-like) 110 432 IPR011009 -
Vimu9g00277 460 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Vimu9g00277 460 SMART serkin_6 135 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00277 460 Gene3D Transferase(Phosphotransferase) domain 1 214 453 - -
Vimu9g00277 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Vimu9g00277 460 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00277 Vimu-Chr9 3358098 3360943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00277 123 422 Receptor kinase-like Gene Family AT1G79620 44.408 4.04e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vimu9g00277 PK_Tyr_Ser-Thr 9.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00277 - - gmx:100792034 691.034