Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00270 ATGGGTTTTCCGGTCGGTTACGCGGAGGTCTTCTTCCCCAACCCCTTCCTCCACACACTGGCCTTCCTCGGCCTCCTCCGAAACCTCGTCTTCTTTCTCTTCCACCTCCTCGGACTCTCCGACTTCCTCGAAACCGAGGTCGCATGGCCGGACCCCCGCATCCCCGCCATCACCGCCGCCGTCTCCAGACCTCCCTCCGTGTCGGCGCTACTCATCAGGGAAATCCTCCCCGTCGCCAAGTTCGGAGAGTCTGGGGAAAACTTCTGCGCCTGCGCCTGCGCCGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGCGCATGCGGAACTGCAAACACATTTTCCATCGCGCCTGCGTGGACCGTTGGATCGATCATGATCAAAAAACATGCCCTCTCTGTAGGACCCCCTTTGTGCCTGATGACATGCTTGATGATTATAATCAACGCCTCTGGGCTGCTTCTGGAATCAACGAGTTCTACTCCGATTACACTTCTTCTTTCTGA 510 0.5725 MGFPVGYAEVFFPNPFLHTLAFLGLLRNLVFFLFHLLGLSDFLETEVAWPDPRIPAITAAVSRPPSVSALLIREILPVAKFGESGENFCACACAVCLFEFSEEEEIRRMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFYSDYTSSF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00270 169 Pfam Ring finger domain 92 136 IPR001841 -
Vimu9g00270 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 143 IPR013083 -
Vimu9g00270 169 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Vimu9g00270 169 SUPERFAMILY RING/U-box 92 143 - -
Vimu9g00270 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 155 - -
Vimu9g00270 169 SMART ring_2 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00270 Vimu-Chr9 3252055 3252564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00270 1 168 C3H Transcription Factor Family AT1G63840 46.821 1.81e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00270 K16281 - gmx:100790975 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00565 6 6848852 6849367 Vimu9g00270 9 3252055 3252564 PCT