Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00258 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGGTATCAGGAAGGACAGGACCCCACTCTCTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCAGGGGATGATGTTAAAATGATATCAGGGGAGGCTCCAATTATCTTCTCCAAGGCTTGTGAGCTCTTCATTGAAGAACTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTCTGCACAAAGAGGACTTGACCTCTGCAGTTATAGCCACTGATCTATTTGACTTTTTGATCACTTTGGTTTCCAATTCTGACAGCCATTCACTTGGTGGCACCACCACTACTACCATGGAGGTAGAAACTATATATCAGTCTTCAGCAACGACCTAA 387 0.4574 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAVIATDLFDFLITLVSNSDSHSLGGTTTTTMEVETIYQSSATT 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00258 128 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Vimu9g00258 128 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
Vimu9g00258 128 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 105 - -
Vimu9g00258 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Vimu9g00258 128 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00258 Vimu-Chr9 3109242 3109628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00258 22 110 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.242 3.94e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu9g00258 CBFD_NFYB_HMF 2.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00258 - - gmx:100777614 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00258 9 3109242 3109628 Vimu9g00258 9 3109242 3109628 ECH