Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00250 ATGTCTGGTGTTGAGTCTGACCACAACAACATCAAAGGGGTACCAACTCATGGTGGACGCTACATTCAGTACAATATCTATGGCAACCTCTTCGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGTGCTTATGGTATTGTTTGGGGTTTTCTTGCTTTGAGCTATGTTGCTGTACTTTCCTATTCTGGTCTAGGATTAGCCGACTTTAGGAGCAAAGACTATGCTGCTGTAAATGCGGAGACAGGAGAGGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAGAGGACCTTACGAGAAATTAAACTTCTTCGGCACATGGATCATGCAAACATTATGTCCATTAGAGATATTATACGACCTCCTCAGAAGGAAAACTTCAATGATGTATACCTTGTTTCCGAGTTAATGGACACAGATCTCCATCAAATAATACGTTCCAATCAACCACTAACTGATGATCATTGTCGGTATTTTCTGTATCAATTGCTTCGAGGACTCAAATATGTACATTCAGCAAATGTTTTGCACCGTGATCTAAAGCCTAGCAATTTGCTATTGAATGCCAATTGTGACCTTAAGATTGCCGATTTTGGCCTTGCTAGAACTACATCTGAAACTGATTTTATGACTGAGTATGTGGTCACTCGATGGTACCGAGCTCCCGAGTTACTTCTTAATTGTTCAGAATATACCGCAGCCATTGATATATGGTCTGTTGGTTGCATACTTGGAGAAATCATAACAAGACAACCACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTAGTCACAGAGCTGATTGGTTCACCCGATGATGCGAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCCCAGTATCCAAAGCAAAACTTTTCTGCTAGATTTCCCAACATGTCTCCTGGTGCTGTTGATTTGCTAGAGAAGATGCTTATCTTTGATCCTAACAGGCGTATTACAGTTGATGAGGCATTGAGCCACCCATACATGGCACCTCTCCACGACATCAATGAGGAACCTGTTTGCACTAGACCCTTCAGTTTTGACTTTGAGCAACCGTCATTCACTGAAGAAGATATCAAGGAACTCATCTGGAGAGAATCTGTGAAGTTCAATCCGCTTCCACCAGTCTACTGA 1197 0.4211 MSGVESDHNNIKGVPTHGGRYIQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVWGFLALSYVAVLSYSGLGLADFRSKDYAAVNAETGEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHANIMSIRDIIRPPQKENFNDVYLVSELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIITRQPLFPGKDYVHQLRLVTELIGSPDDASLGFLRSDNARRYVKQLPQYPKQNFSARFPNMSPGAVDLLEKMLIFDPNRRITVDEALSHPYMAPLHDINEEPVCTRPFSFDFEQPSFTEEDIKELIWRESVKFNPLPPVY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00250 398 Gene3D Phosphorylase Kinase; domain 1 80 387 - -
Vimu9g00250 398 ProSitePatterns MAP kinase signature. 99 202 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu9g00250 398 SUPERFAMILY Protein kinase-like (PK-like) 79 357 IPR011009 -
Vimu9g00250 398 FunFam Mitogen-activated protein kinase 148 377 - -
Vimu9g00250 398 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 351 - -
Vimu9g00250 398 Pfam Protein kinase domain 79 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00250 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vimu9g00250 398 SMART serkin_6 38 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00250 398 CDD STKc_TEY_MAPK 31 393 - -
Vimu9g00250 398 FunFam Mitogen-activated protein kinase 74 158 - -
Vimu9g00250 398 Gene3D Transferase(Phosphotransferase) domain 1 148 377 - -
Vimu9g00250 398 ProSiteProfiles Protein kinase domain profile. 38 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00250 Vimu-Chr9 3041948 3046612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00250 3 393 MAP Kinase Gene Family AT4G01370 79.795 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu9g00250 Pkinase 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00250 K20600 - gmx:100779469 726.087