LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu9g00248	ATGCACAAAAAGGCATCTTTGGTCCTCGAAGATGCAGTTAGGAACATTTACACCGTGGTTGCTTTCGATGCTAGTAACAAGGTAATGGAGCTCTATAGGCTGCAATTGAAGAAAATATTTAAGCAGAGCTTTCTATATGGGATGGCAATTTGTTTTGCATTTGGTTTTTCACAATTTCTACTTTTTGCTTGTAATGCCTTGCTACTTTGGTACACTGCCATATGTATAAAGCGAGGTTACGTGGATCCACCGGCTGCACTCAAAGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGATTTTAGCCTCAAAGTCAATGGGGGCCAAACAATTGCTATTGTCGGAGTTTCAGCCCGAAAAAACCGCGCTCCACAATTGTCTCGAAACCATTGACGAGACCCTCGACAAGCTAAAAGATGATAAACGCGATATCGAGTTTTATCCTAACAAGAAAACACTATACCAGTACGTCGACGATGTTAAAACCTTAATTAACACCGCCATAACCAACCAGGTCACATGCCTCGATAGCTTCTCGCATGAGGACGCCGATAACCCAACTGGAAGCCCAACTATAATCTTGTATCCATTTGAACCCAATTCTGTATCTCACGGCCTTCGATTCGAAGACATAAACCTCTATACTCGCCCGCACAAGCAGCTTAGGGCGACGCTGAATCCTTTCTGTTCGTTCATCCTTTCTCCGATCGGAAAACCGGGTCGCTGTCGTAACCATGGGGATTACATAGAGCGTCACCGAAGAGACTATGGCTACCGCCTCGATCACTTCGAGCGCAAGCGCAAGAAAGAGGCTCGGCAAGTTCACAAGCGCTCCGCAATGGCTCAGAAGGCCCTTGGTATCAAGGGGAAGATTATTGCCAAGAAAAATTATGCTGAAAAAGCGCAGATGAAGAAGACTTTGGCTATGCATGAAGAGTCAACATCCCGACGCAAGGCTGATGATAATGTTCAAGATGGAGCCGTTCCTGCTTATCTTCTGGATCGTGATAACACGACCAGAGCAAAGGTTCTCAGCAACACCATTAAGCAAAAGAGGAAAGAGAAGGCTGGAAAGTGGGATGTTCCTCTACCCAAGACCTCTGTTGAAATTTATCGACCACCTGTCACAGAACCTGGCTGGTGCATGCTACTAAAGTTGAATAGCAGCTTTCTTGGCTGTGATAGTGGAAAAAATTATGTAAAACGGCAGCTGGAGCAGGGGCTATTGGAGGCTGTTTTGGCAGGGAAATTTGAGATTTTACGCCCCTCCGTTGATGATCACTTGACAGACTATTATGTGGTAGAACCCACCGTTCTACTTTACCTTGAACAGATACTCATCTTTGGCAACGTTCGTCCTGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGACCAAGCAATGGAAGAGGATGGTTACTAAGGCAACATTTGTTGGGCCTGGTTTTACCAGGAAGCCTCCAAAGTATGAGAGATTCATTCGTCCAACAGGTTTGCGGTTCACCAAGGCCCATGTCACTCATCCAGAACTTAAATGCACGTTTAATCTAGAAATAATTGGAGTAAAGAAGAACCCTAACGGCCCTATGTACACCTCTCTTGGTGTTATGACCAAGGGAACTATAATTGAGGTGAATGTCAGTGAACTTGGCCTTGTCACACCTGCGGGAAAAGTTGTGTGGGGTAAATATGCTCAGGTTACCAATAATCCCGAAAATGATGGTTGTATAAATGCTGTTTCTAATCCTATGCTTTTTGCTGTCTTATGCTATGACTGCATCACCACGACCAATGTTCGCGGAAAGTTGTCCAATCTTTGCTGGGGCCTGAGACTTTGTCTGGGGAAACAATACACTCATAATCAGACACCAGTCACTGTTGCTCATGCACTGGCAAGTTTGGCATTGACAATGAAGCCTAATTCTTTGACCAAGTTCCTGCAACTTCGATACTCTCAGTGCCTGTTATCCCATATGGGAAATGTAAGCCATTCATGGCAAAAAGAGTTGAAGATACAGTTGATATTCATTACGATCCAGCGTGTTCATTTATCACAACAAAACAATAATGAAGTTGGCAATGATGTTAATGGATTGAAACTGTTTCCATCAAGATAG	2211	0.4369	MHKKASLVLEDAVRNIYTVVAFDASNKVMELYRLQLKKIFKQSFLYGMAICFAFGFSQFLLFACNALLLWYTAICIKRGYVDPPAALKEYMVFSFATFALPPNVYGSIELKNVDFCYPSRPEVLVLILASKSMGAKQLLLSEFQPEKTALHNCLETIDETLDKLKDDKRDIEFYPNKKTLYQYVDDVKTLINTAITNQVTCLDSFSHEDADNPTGSPTIILYPFEPNSVSHGLRFEDINLYTRPHKQLRATLNPFCSFILSPIGKPGRCRNHGDYIERHRRDYGYRLDHFERKRKKEARQVHKRSAMAQKALGIKGKIIAKKNYAEKAQMKKTLAMHEESTSRRKADDNVQDGAVPAYLLDRDNTTRAKVLSNTIKQKRKEKAGKWDVPLPKTSVEIYRPPVTEPGWCMLLKLNSSFLGCDSGKNYVKRQLEQGLLEAVLAGKFEILRPSVDDHLTDYYVVEPTVLLYLEQILIFGNVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVMTKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVSNPMLFAVLCYDCITTTNVRGKLSNLCWGLRLCLGKQYTHNQTPVTVAHALASLALTMKPNSLTKFLQLRYSQCLLSHMGNVSHSWQKELKIQLIFITIQRVHLSQQNNNEVGNDVNGLKLFPSR	736

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu9g00248	736	Pfam	Ribosomal protein S8e	483	611	IPR022309	-
	Vimu9g00248	736	Pfam	ABC transporter transmembrane region	4	91	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vimu9g00248	736	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	145	208	IPR035513	-
	Vimu9g00248	736	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	1	83	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vimu9g00248	736	SUPERFAMILY	ABC transporter transmembrane region	6	97	IPR036640	GO:0005524\|GO:0016020
	Vimu9g00248	736	Gene3D	ABC transporter type 1, transmembrane domain	2	106	IPR036640	GO:0005524\|GO:0016020
	Vimu9g00248	736	Gene3D	-	532	613	-	-
	Vimu9g00248	736	Gene3D	Invertase/pectin methylesterase inhibitor family protein	129	219	IPR035513	-
	Vimu9g00248	736	PANTHER	RIBOSOME BIOGENESIS PROTEIN NSA2 HOMOLOG	477	611	IPR039411	-
	Vimu9g00248	736	CDD	NSA2	273	611	IPR039411	-
	Vimu9g00248	736	FunFam	NSA2, ribosome biogenesis homolog	531	613	-	-
	Vimu9g00248	736	Pfam	Plant invertase/pectin methylesterase inhibitor	144	208	IPR006501	GO:0004857

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu9g00248	Vimu-Chr9	3017820	3029018	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu9g00248	146	211	Carbohydrate Esterase	AT3G14310	66.667	7.53e-22	98.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu9g00248	K14842		-	gmx:100812311	277.33