Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00247 ATGTCAGTGTATGACGCAGCTTTCGTCGACACACAGCTTTCCAAACGCACTTCCATCTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCCTTGTCGGATCCCTCATCGTCATCGTCCTCTTTTTCATCTCTCTCTGCCTCACATCCCGCCGCCGCCACCACCACAAAACTCCCCTCCGCCGCCGCGCCGCCGCCATCCCCACTCCGCCCATTTCCAAGGAAATCCTGGAGATCGTTCACGTTGCCCCTCCGCCAGACATCGTCAACCTCCCGCCTCCGAAAGCGGAGCCACGCGCCGCCGCCGTACTGTACTCCAGTGGGGAGAGCAGGGGAGCGGTGAGCCTGTGCGAAACGGCGTCGTCACTGGGGAGCGGGAGTGTGGGCCCCGAAGTGTCGCATCTCGGGGAACTGGAAGCTGCGACTAATGGATTGTGTGAAGAGAACGTGATTGGTGAAGGTGGCTATGGAATTGTTTATCGTGGGTTGTTACCTGATGGAAACAAGGTTGCTGTCAAGAACCTTTTGAATAATAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGCCATAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCTTACAGGATGCTTGTATATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCACGGTGATGTTGGAGCTGTGAGCCCTATAACCTGGGATATCCGAATGAACATTATATTGGGCACTGCAAAAGGACTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACAGAGACGTGAAATCGAGCAACATACTGCTTGATCGTCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCCAAGCTTTTGTCTGCTGATCATAGTTATGTCACTACTCGAGTTATGGGAACCTTTGGTTATGTTGCACCTGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATGTGTATAGTTTTGGAATACTTATCATGGAAATAATTACAGGAAGAAGTCCTGTTGATTACAGTAGACCACAAGGAGAGGTTAATTTGATAGAGTGGTTGAAAAGCATGGTTGCGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAGGGCTATTAAACGGGCTCTTTTGGTTGCTCTTCGATGTGTCGACCCTGATGCTGCAAAGAGGCCTAAAATAGGCCATGTTATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATGAACGAAGGACTGAGGGAGAATCTTCCCGTTCCCACCGTGATTATCAACTGGAGCATAAAGGCTCAGGATTAGACAAAAGACAAACAGGTGGAGAAATCAACTCTCAGAGTGAAGATGACAGTTCTACTAGTAGTAGATATCACCATCATCAGCCTACTAGATGGAGATAA 1428 0.4874 MSVYDAAFVDTQLSKRTSIFGLRLWVVIGILVGSLIVIVLFFISLCLTSRRRHHHKTPLRRRAAAIPTPPISKEILEIVHVAPPPDIVNLPPPKAEPRAAAVLYSSGESRGAVSLCETASSLGSGSVGPEVSHLGELEAATNGLCEENVIGEGGYGIVYRGLLPDGNKVAVKNLLNNKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPITWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLSADHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKSMVANRKSEEVVDPKIAEKPSSRAIKRALLVALRCVDPDAAKRPKIGHVIHMLEAEDLLFRDERRTEGESSRSHRDYQLEHKGSGLDKRQTGGEINSQSEDDSSTSSRYHHHQPTRWR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00247 475 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Vimu9g00247 475 Gene3D Phosphorylase Kinase; domain 1 120 214 - -
Vimu9g00247 475 Gene3D Transferase(Phosphotransferase) domain 1 215 426 - -
Vimu9g00247 475 MobiDBLite consensus disorder prediction 421 445 - -
Vimu9g00247 475 MobiDBLite consensus disorder prediction 421 475 - -
Vimu9g00247 475 SMART serkin_6 144 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00247 475 SUPERFAMILY Protein kinase-like (PK-like) 128 411 IPR011009 -
Vimu9g00247 475 PANTHER OS01G0323000 PROTEIN 8 431 - -
Vimu9g00247 475 ProSiteProfiles Protein kinase domain profile. 144 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00247 475 Pfam Protein kinase domain 147 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00247 475 FunFam Putative receptor-like serine/threonine-protein kinase 215 425 - -
Vimu9g00247 475 CDD STKc_IRAK 150 411 - -
Vimu9g00247 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00247 Vimu-Chr9 3014228 3017418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00247 121 411 Receptor kinase-like Gene Family AT4G02010 45.455 2.58e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu9g00247 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00247 - - gmx:100777348 786.563