Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00246 ATGGTGTCGGTGAACCCGAACCCCGCCCAAGGCTTTTACTTCTTCGATCCCTCCAATATGACCCTTCCCGGCGTGAATTCTCTTCCGCCGCCACCGCCGCCAACTCAGACTCCGGCCGTTTCCCCCGCCGTGGAGGATCCAAATAAGAAGATCCGGAAACCCTACACGATTACGAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAATTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAGAAGATTGAAGCATTTGTTGGTTCAAAAACTGTTATCCAGATAAGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTTCCTCCTCCCCGGCCAAAGAGAAAAGCTACTCACCCATACCCTCAAAAGGCTCCTAAAATCACTCCTACTGCATCCCAAGTTATGGGCCCACTGCAACCTTCATCTGCTTTTATTGAACCTGCATATATTTATAGCTCGGATTCTTCATCTGTTCTTGGAACTCCAGTTACCAACATGCCTTTGACGACTTGGAACTATAATACTAAACCACCCGTCAATGTGCCACAAGTGACTAGAGATGACATGGGCTTGACCGGAGTGGCACAAACCGTTCCTCTTAACTGTTGCTATAGCAGTAGTAATGAGAACACCCCTCCAACTTGGCCAAGTAGCAAAAAGATGAATCAAGGTGGCCAGGGCAAGCCAATGAAAGTAATGCCAGATTTTGCTCAAGTCTACAGCTTCATTGGCAGTGTTTTTGATCCAAATTCGACTAATCAACTTGAGAAACTAAGACAGATGGACCCAATAAATGTGGAAACGGTATTACTGTTGATGAGAAATCTATCAGTCAATTTAATGAGTCCAGAGTTTGAGGACCATGTAAGTTTGTTTCCAACAAAAAGGCTGCTTTCATCATATGATACCGACTCTGATGAGTCGAAGCATGTTAATATTTGCAGCAAATCCCTCACTAATAAATCCGAGAGTGCTATTATGTCTGCATAA 1023 0.4457 MVSVNPNPAQGFYFFDPSNMTLPGVNSLPPPPPPTQTPAVSPAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPTASQVMGPLQPSSAFIEPAYIYSSDSSSVLGTPVTNMPLTTWNYNTKPPVNVPQVTRDDMGLTGVAQTVPLNCCYSSSNENTPPTWPSSKKMNQGGQGKPMKVMPDFAQVYSFIGSVFDPNSTNQLEKLRQMDPINVETVLLLMRNLSVNLMSPEFEDHVSLFPTKRLLSSYDTDSDESKHVNICSKSLTNKSESAIMSA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00246 340 MobiDBLite consensus disorder prediction 218 239 - -
Vimu9g00246 340 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vimu9g00246 340 SMART sant 60 108 IPR001005 -
Vimu9g00246 340 MobiDBLite consensus disorder prediction 23 53 - -
Vimu9g00246 340 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vimu9g00246 340 PANTHER SWI/SNF COMPLEX-RELATED 31 292 - -
Vimu9g00246 340 MobiDBLite consensus disorder prediction 218 235 - -
Vimu9g00246 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vimu9g00246 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vimu9g00246 340 CDD SANT 63 106 IPR001005 -
Vimu9g00246 340 MobiDBLite consensus disorder prediction 112 146 - -
Vimu9g00246 340 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vimu9g00246 340 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vimu9g00246 340 MobiDBLite consensus disorder prediction 24 40 - -
Vimu9g00246 340 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Vimu9g00246 340 Gene3D - 64 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00246 Vimu-Chr9 3005631 3011072 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu9g00246 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00246 - - gmx:778090 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00246 9 3005631 3011072 Vimu9g00246 9 3005631 3011072 ECH
Vimu9g00246 9 3005631 3011072 Vimu6g00583 6 7010619 7015117 ECH
Vimu6g00583 6 7010619 7015117 Vimu9g00246 9 3005631 3011072 PCT