Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00234 ATGGAGGGATATTACAGATGTAGCAGCTCAAAAGGATGTTTAGCCAGAAAACAAGTGGAGAGGAACAAATTGGACCCAACAAAGTTCGTAGTGACATACACTGGTGAACACAACCACCCTGCTCCTACTCATAAAAGCTCCCTTGCTGGCTCCACTCGCTACAAACCTCAGACTGGTGGAGACACAGCCACCACAAGACCTGTTTCTCCAGCGACCTCATCAGAGGTGGCACAGCACAGTACAAAGTCAGAGTGCACAGAAGAGGAGTTGGAAGATCTGATGAAAGATGATGATGAAGAAGCAAATGAATTTGACTTAACAGAATCAGTGGTATCAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGAGTCTCCCTTTACAGCTAGTAGTATCATTGATCGGTGGTCACTGACCAATAATGCTACCACTGCCGCTGGTGGTAGCTGA 450 0.46 MEGYYRCSSSKGCLARKQVERNKLDPTKFVVTYTGEHNHPAPTHKSSLAGSTRYKPQTGGDTATTRPVSPATSSEVAQHSTKSECTEEELEDLMKDDDEEANEFDLTESVVSDDFFEGLEELTESPFTASSIIDRWSLTNNATTAAGGS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00234 149 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 127 IPR044810 GO:0003700
Vimu9g00234 149 Pfam WRKY DNA -binding domain 3 40 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00234 149 MobiDBLite consensus disorder prediction 39 80 - -
Vimu9g00234 149 Coils Coil 76 96 - -
Vimu9g00234 149 ProSiteProfiles WRKY domain profile. 1 42 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00234 149 MobiDBLite consensus disorder prediction 33 89 - -
Vimu9g00234 149 SMART WRKY_cls 3 41 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00234 149 Gene3D WRKY domain 1 43 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00234 149 SUPERFAMILY WRKY DNA-binding domain 3 42 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00234 Vimu-Chr9 2836959 2837582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00234 2 148 WRKY Transcription Factor Family AT4G01250 49.045 5.01e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu9g00234 WRKY 1.6e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00234 K13425 - gmx:100815829 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00234 9 2836959 2837582 Vimu8g02244 8 29196482 29197057 ECH
Vimu9g00234 9 2836959 2837582 Vimu3g02990 3 43943056 43944804 ECH
Vimu9g00234 9 2836959 2837582 Vimu9g00234 9 2836959 2837582 ECH
Vimu9g00234 9 2836959 2837582 Vimu6g00589 6 7112746 7114423 ECH
Vimu7g02426 7 20778539 20779187 Vimu9g00234 9 2836959 2837582 ECH
Vimu11g02887 11 48736625 48741947 Vimu9g00234 9 2836959 2837582 ECH
Vimu6g00589 6 7112746 7114423 Vimu9g00234 9 2836959 2837582 PCT