Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00218 ATGGAAAGCCAAGACCTTCCAAACTCTTCTCCCCTCGTTTTCACTCCCACGTCAATGATGCAAAACCCTTTGGAGCCTCAAGGCTTGCATGATGACATAGACTGGGTTAGCCTTTTCTCTAGCCAAAACAGTTTCCTTGGGAATGCCAAGCCCACGATGGAATACGCTTCTTCTTCGTCTTCATCTTCCTCGACTTCATCATCCTTGTCGTGTGCTTTGATCGCTGAAAACGGTGCTCACGTTGATGAAAAGAATGATAAAGAGAAAAGGAAAGGAGGCAGAATGAAGAAGACAACACGACCCAGGTTTGCGTTTCAGACTAGAAGTGCAGATGATATTCTGGATGATGGTTATCGTTGGAGGAAATATGGGCAGAAAGCTGTGAAGAACAACATGCATCCCAGAAGCTACTACCGCTGCACGCATCATACATGTAATGTGAAGAAACAGGTGCAAAGGCTGTCTAAAGACACAAGCATCGTGGTGACCACTTACGAGGGTATTCACAATCATCCATGCGAAAAACTCATGGAAACCCTAACACCTCTTCTCAAGCAAATGCAGTTTCTCTCTAGCTTAGGTTCCAATAACAACACTTCTTCTGCTTCTCTATTATAG 618 0.445 MESQDLPNSSPLVFTPTSMMQNPLEPQGLHDDIDWVSLFSSQNSFLGNAKPTMEYASSSSSSSSTSSSLSCALIAENGAHVDEKNDKEKRKGGRMKKTTRPRFAFQTRSADDILDDGYRWRKYGQKAVKNNMHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLSSLGSNNNTSSASLL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00218 205 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 177 IPR044810 GO:0003700
Vimu9g00218 205 SMART WRKY_cls 114 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00218 205 MobiDBLite consensus disorder prediction 1 26 - -
Vimu9g00218 205 ProSiteProfiles WRKY domain profile. 109 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00218 205 SUPERFAMILY WRKY DNA-binding domain 107 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00218 205 Pfam WRKY DNA -binding domain 115 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00218 205 Gene3D WRKY domain 99 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00218 205 FunFam WRKY transcription factor 57 100 174 - -
Vimu9g00218 205 MobiDBLite consensus disorder prediction 80 99 - -
Vimu9g00218 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00218 Vimu-Chr9 2675753 2678836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00218 84 193 WRKY Transcription Factor Family AT5G41570 73.451 5.45e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu9g00218 WRKY 2.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00218 - - gmx:100810669 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00218 9 2675753 2678836 Vimu9g00218 9 2675753 2678836 ECH
Vimu6g00592 6 7141618 7142655 Vimu9g00218 9 2675753 2678836 PCT