Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00213 ATGTCCTCCTTCAACTCCTTCTCCCCTCCACCCCCCACCCCTTACTTTACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGAGTCCTCTTCCTCATCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACAACCAACGCCGTCGCCGCCACAACCCCCACGCCCCTGATGGCATCGTCCTCCCGCGCGTTATCTTCGTTGCCGAGGACGACGACGACGGCGCCCGACAGAACGACGCCGTCTCCGGCCTCGAACAGTCCGTCATAAACTCCTACCCCAAGTTCCCCTTCGCGAAAGACGGCGGCTACGACACCACGTGCTCCATCTGTCTCTGCGAGTACAAGGATTCGGAGATGCTTAGAATGATGCCCGAGTGTCGACACTACTTTCACCTCTGCTGTCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTGTGCCGGAACTCCCCCATGCCCACGCCGCTGTCCACGCCGCTTCAGGAGGTCGTGCCGCTATCGCAGTACGCCGCCGATGCTAGGGGGAGGAGGTGA 567 0.6261 MSSFNSFSPPPPTPYFTNLGFGYSIAIALGVLFLISTLILSSYLCCRTLRHRNNNQRRRRHNPHAPDGIVLPRVIFVAEDDDDGARQNDAVSGLEQSVINSYPKFPFAKDGGYDTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADARGRR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00213 188 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Vimu9g00213 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 164 IPR013083 -
Vimu9g00213 188 SUPERFAMILY RING/U-box 116 164 - -
Vimu9g00213 188 SMART ring_2 117 158 IPR001841 -
Vimu9g00213 188 PANTHER RING-H2 FINGER PROTEIN ATL67 13 185 IPR044289 GO:0016567|GO:0016740
Vimu9g00213 188 Pfam Ring finger domain 116 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00213 Vimu-Chr9 2657976 2658542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00213 9 179 C3H Transcription Factor Family AT5G06490 36.842 5.90e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00213 - - vra:106773185 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00213 9 2657976 2658542 Vimu9g00213 9 2657976 2658542 ECH
Vimu6g00603 6 7248916 7251772 Vimu9g00213 9 2657976 2658542 PCT