Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00168 ATGGGAAACAGTGAGGAAGGGAAATCTGTTAAAACTGGAAGTCCTTCTTCACCAGCAACAACTGATCAGGCCAATCAGACATATCAGCCTAACATTCATGTCTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACATTCCTCCATACTTCAACTCAACTGTGGCTTCTGGTCATGCTCCACACCCATTCATGTGGGGTCCGCCACAGCCTATGATGCCACCTTATGGGCCACCATATGCAGCATTTTATCCTCCTGGTGGAGTTTATACTCACCCTGCAGTTGCTATTGGGCCACATTCACACGGCCAGGGAGTTCCATCTCCACCTGCTGCTGGGACTCCTTCAAGTGTAGATTCACCGACAAAATTATCTGGAAATACTGATCAGGGGTTAATGAAGAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCAGAGAGTGCTGAGCTTGGAGCCGAAAACAGGCTGTCACAGAGTGTGGATACTGAGGGTTCTAGCGATGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAATGAAAAGAAGCCGAGAGGAAACATCAACCACTGATGGAGAAGGGAAAACTGAGACACAAGATGGCCCAATTTCCAAAGAGACTGCATCTTCGAAAATAGTTGTGCCTGCTACCCCAGCTAGTATTGCAGGAAAGTTTGTAGGTCCTGTAATTTCTTCAGGTATGACCACAGCATTGGAGCTCAGGAACTCTTTGACTGTTCATTCTAAGGAAAATCTCACGAGTGCCCCACAACCTTGTGCAGCTGTGCCTCCTGAAGCTTGGATACAGAATGAGCGTGAGTTGAAACGGGAGAGGAGGAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCACGAAAAGTTGAGATGTTAACTGCTGAAAATGTGTCACTGAAGTCAGAAATAACTAAATTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGATAAATACTCAACTGGGACAAAGGGAAGAGATAATTTTGGAAAGCATTGACAGCAAGAGGTCTACACCAGTAAGTACTGAGAACCTGCTATCAAGAGTTAATAATTCCAGTTCTAACGATAGAAGTGCAGACAATGAGAGTGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTTGCTGCTGGGTGA 1281 0.4528 MGNSEEGKSVKTGSPSSPATTDQANQTYQPNIHVYPDWAAMQYYGPRVNIPPYFNSTVASGHAPHPFMWGPPQPMMPPYGPPYAAFYPPGGVYTHPAVAIGPHSHGQGVPSPPAAGTPSSVDSPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAESAELGAENRLSQSVDTEGSSDGSDGNTAGANQTKMKRSREETSTTDGEGKTETQDGPISKETASSKIVVPATPASIAGKFVGPVISSGMTTALELRNSLTVHSKENLTSAPQPCAAVPPEAWIQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITKLTEGSEQMRMENSALREKLINTQLGQREEIILESIDSKRSTPVSTENLLSRVNNSSSNDRSADNESDFCENKPNSGAKLHQLLDTNPRADAVAAG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00168 426 CDD bZIP_plant_GBF1 286 334 IPR045314 GO:0003700|GO:0006355
Vimu9g00168 426 SUPERFAMILY Leucine zipper domain 284 339 IPR046347 GO:0003700|GO:0006355
Vimu9g00168 426 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700|GO:0006355
Vimu9g00168 426 Gene3D - 284 338 - -
Vimu9g00168 426 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 393 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vimu9g00168 426 MobiDBLite consensus disorder prediction 1 29 - -
Vimu9g00168 426 MobiDBLite consensus disorder prediction 113 132 - -
Vimu9g00168 426 MobiDBLite consensus disorder prediction 160 188 - -
Vimu9g00168 426 MobiDBLite consensus disorder prediction 189 203 - -
Vimu9g00168 426 MobiDBLite consensus disorder prediction 369 393 - -
Vimu9g00168 426 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Vimu9g00168 426 Pfam Disordered region downstream of MFMR 132 260 - -
Vimu9g00168 426 MobiDBLite consensus disorder prediction 369 410 - -
Vimu9g00168 426 Coils Coil 308 328 - -
Vimu9g00168 426 SMART brlzneu 281 345 IPR004827 GO:0003700|GO:0006355
Vimu9g00168 426 FunFam G-box binding factor 3 284 339 - -
Vimu9g00168 426 Pfam bZIP transcription factor 281 343 IPR004827 GO:0003700|GO:0006355
Vimu9g00168 426 MobiDBLite consensus disorder prediction 102 134 - -
Vimu9g00168 426 MobiDBLite consensus disorder prediction 204 221 - -
Vimu9g00168 426 MobiDBLite consensus disorder prediction 283 309 - -
Vimu9g00168 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 346 IPR004827 GO:0003700|GO:0006355
Vimu9g00168 426 MobiDBLite consensus disorder prediction 160 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00168 Vimu-Chr9 2021020 2024013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00168 1 426 bZIP Transcription Factor Family AT2G46270 48.853 9.31e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu9g00168 MFMR_assoc 3.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00168 K09060 - gmx:547789 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00168 9 2021020 2024013 Vimu9g00168 9 2021020 2024013 ECH
Vimu2g01588 2 11167017 11170705 Vimu9g00168 9 2021020 2024013 PCT