Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00157 ATGAACTCTCAGTCACAACAACAGCAACAAGGCAAACAGAAGAGCCGAGAAGAAGAGGAGGAAGAAGAAAACCATTTGTTACAATCAGAATGCGAGTCAATACCGTTGTCTTCACCCCATGTATTACCCTCAAACTGGGAACATGCAGACAAAGAAGAAGAAGAAGAAGAGAAAGACTCCGTGTATGCAGCCAAGGACAAGGTGCAGATATTTGACTTGGAGTCTTCCGGCGCAGCAGGGTCCACGGCGGTGCCGCCGTTTTCGTGGAGGAAGCTTTGGCTGTTCACGGGGCCAGGGTTGTTGATGAGCGTGGCGTTTTTGGACCCGGGGAACCTCGAAGGGGACCTTCAAGCTGGTGCGATTGCAGGGTACTCCTTGCTTTGGTTGTTGATGTGGTCCACCATCATGGGGTTGGTGATACAACTTCTGTCGGCGAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTGTGTAGGGAGGAATACTCCAATTGGGCAAGGTTGGTGTTGTGGATCTTGGCTGAGATGGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCCATTGCTTTCAAGATTCTTAGCCATGGCCTTATCCCCATTTGGGCTGGTGTCGTTATCACAGCCACGGATTGTTTCTTTTTTCTATTTCTCGAGAACTATGGAGTGAGGAAGTTGGAAGGGGTTTTCGCAGTTTTCATTGGAACTATGGGCCTTTCTTTTGCGTGGATGTTCTTTGATACAAACCCCAGTGAAGAAGAACTAATGATGGGTCTTTTAATCCCAAGACTTAGTTCAAAAACTCTTCGCCAGGCTGTGGAAATTGTGGGGTGTGTGATAACCCCACATAATGTTTTCCTCCATTCTGCATTGGTACAATCAAGGGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTCTCAACTACTACTCAATTGAGTCTTCAGTTGCACTTTTAGTCACACTGTTGATCAATCTATCTGTGATAACAGTTTTTGCTAGAGTGTTCTATGGTACAGAACAGGCCAATGGCATAGGATTGGTAAATGCAGGGCAATATCTTGAGGAAAGGTATGGCGGAGGGTTGTTTCCAATTCTCTACATATGGGGTATTGGTTTATTAGCAGCTGGCCAAAGTAGTACCATAACTGGCACATATGCTGGCCAGTTTATAACAGAGGGTTTTCTTAAGCTCAACATAAAGAAGTGGTTGAGAGCATTGATTACCAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCTATTGTTTTTAATACATCAGAAAGTTCATTGGATACCATGAATGAATGGCTTAATGTGGTCCAAGCCATACAGATTCCTTTTGCTCTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTGATGGGAACCTTCAGAATAGGGCCTATAGTAGAGAAAGTGGCTTGGAGTGTGGCTGTGCTGGTAATACTAGTTTATGGATATATGTTATTAGATTTCTTCCTGGAAGAAGTAGATGGAGTATTGTTTGGTTTTCTGGTCTGCCTTGGTGCTGCAGCATGGATTTCATTTATTGTATATTTGGTTCAACACAGTGGTGCCATTCCTTCACTCATGACCAGGTCACCTAATTCAAGAGGTTTTTTCTCTCTTTCTGGGAACTAA 1662 0.4513 MNSQSQQQQQGKQKSREEEEEEENHLLQSECESIPLSSPHVLPSNWEHADKEEEEEEKDSVYAAKDKVQIFDLESSGAAGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAEMALIAADIQEVIGSAIAFKILSHGLIPIWAGVVITATDCFFFLFLENYGVRKLEGVFAVFIGTMGLSFAWMFFDTNPSEEELMMGLLIPRLSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSVALLVTLLINLSVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIVFNTSESSLDTMNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVEKVAWSVAVLVILVYGYMLLDFFLEEVDGVLFGFLVCLGAAAWISFIVYLVQHSGAIPSLMTRSPNSRGFFSLSGN 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00157 553 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 90 468 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 MobiDBLite consensus disorder prediction 1 59 - -
Vimu9g00157 553 Pfam Natural resistance-associated macrophage protein 113 474 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 17 529 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 Hamap Divalent metal cation transporter MntH [mntH]. 78 500 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 NCBIfam Nramp family divalent metal transporter 97 466 - -
Vimu9g00157 553 PRINTS Natural resistance-associated macrophage protein signature 275 298 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 PRINTS Natural resistance-associated macrophage protein signature 382 401 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 PRINTS Natural resistance-associated macrophage protein signature 171 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 PRINTS Natural resistance-associated macrophage protein signature 410 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 PRINTS Natural resistance-associated macrophage protein signature 201 220 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 PRINTS Natural resistance-associated macrophage protein signature 226 247 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu9g00157 553 PRINTS Natural resistance-associated macrophage protein signature 444 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00157 Vimu-Chr9 1864691 1868686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00157 55 531 Inorganic Solute Cotransporters AT1G47240 73.695 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00157 K21398 - gmx:100801411 970.689