Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00121 ATGCATACAAAGCTGTTAACCCAAATTCGTCTTCTTCATCCCCTTCTTCCCATGAAGCCTCGCACTCTTCCTCTTCTCTCACGCGCCTTCTTCTTCCCTCCCTCCAAGTTTCTCCGAACCGCACCGTTTAAAGCTCGCGCCTTTTCCTCCCGGGCCCACGCTCACGCCCGCGACAAGCTTCCGGTTCGCCCCTCCAAGAGCCTCGTAGACGACGAGGCTGACCTCAGCGACTGGGTCGATGATTTGCGGACCGGCCGGGTCGACCGCTTCTCCCAGCGGTTCAGCAGCGACGACGATGAAGACCGCAAATTCCGGCCGCCGCCGAGGAACAACAATAGGGCTTCCACCAATTTGGGGAAGAGGAGGGGCGAGGGTTTGCGGATAGGAAGGCAGAATGCGAACGCGAGGAGAAAGATTCGACCAAGGAGTGACGACGATGAGGAAGTGGTGGAGAGTGGAAGGAAGTTCAAAGGTCGTGGCGTTAGAGCGTTTCTCAGCGAAGATGAAAGTGAAGATGAAGAGAGTGATGTTAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGGTCTGAACCGGAGGACTGTTGAACCGACTCCTAGACCATCTTCTCCTGGGGGTTCTGATTCTTATCTGAGTGAATCAAGGTGTGTTCGTTATACCATTAATGTTTCTGTTATGCTACTTGAAATGGTTTTGGAGATTAACTCTCCCCCCTCTTCCAAACCTGCAAAGCCCTGGGAAAACTGGGCTTTCATTGGGTTTAGGCCTCAATTTGACCAATGTTCAGTCTCCCAGCCGTCACTTAAAGGAGTAAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAAGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACAGGAAAAACAGTAGCATTTTTGCTTCCATCAATTGAAGTTGTGGTGAAGTCACCTCCAAGTGATCGTGATCACCGGAAGCCACCAATTTTTGTTCTTGTCATATGTCCAACTCGAGAACTTGCAAGTCAGGCTGCCGCAGAGGCCAATAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTTCAACTAGGCTGATGGGTGTGAAGGTTTTGGTTCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAAAGGATAATTGCCGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTGCGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCATTGGACAAGCATTTCCCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGATCTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTAATCCTGGTTACTTCAGATGTATCTGCTCGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAATATATACATCGCTTGGGTAGAACAGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCTACTGTAAAAGATTTGCCTATTGAGAAAGCTCCCGTGGTGCCTTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTGGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCCAAATAG 2202 0.47 MHTKLLTQIRLLHPLLPMKPRTLPLLSRAFFFPPSKFLRTAPFKARAFSSRAHAHARDKLPVRPSKSLVDDEADLSDWVDDLRTGRVDRFSQRFSSDDDEDRKFRPPPRNNNRASTNLGKRRGEGLRIGRQNANARRKIRPRSDDDEEVVESGRKFKGRGVRAFLSEDESEDEESDVSEEEEILNKSRTALFGQQNGLNRRTVEPTPRPSSPGGSDSYLSESRCVRYTINVSVMLLEMVLEINSPPSSKPAKPWENWAFIGFRPQFDQCSVSQPSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPSDRDHRKPPIFVLVICPTRELASQAAAEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFSTRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00121 733 PANTHER RNA HELICASE 183 662 - -
Vimu9g00121 733 CDD SF2_C_DEAD 493 626 - -
Vimu9g00121 733 Pfam DEAD/DEAH box helicase 289 466 IPR011545 GO:0003676|GO:0005524
Vimu9g00121 733 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 660 IPR001650 -
Vimu9g00121 733 Gene3D - 259 479 IPR027417 -
Vimu9g00121 733 Pfam Helicase conserved C-terminal domain 517 617 IPR001650 -
Vimu9g00121 733 MobiDBLite consensus disorder prediction 93 108 - -
Vimu9g00121 733 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 478 IPR014001 -
Vimu9g00121 733 SMART helicmild6 536 617 IPR001650 -
Vimu9g00121 733 MobiDBLite consensus disorder prediction 93 219 - -
Vimu9g00121 733 MobiDBLite consensus disorder prediction 188 219 - -
Vimu9g00121 733 MobiDBLite consensus disorder prediction 137 166 - -
Vimu9g00121 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 633 IPR027417 -
Vimu9g00121 733 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 264 292 IPR014014 GO:0003724
Vimu9g00121 733 Gene3D - 487 711 IPR027417 -
Vimu9g00121 733 CDD DEADc_MSS116 271 480 - -
Vimu9g00121 733 SMART ultradead3 283 496 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00121 Vimu-Chr9 1426337 1432122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00121 261 648 Eukaryotic Initiation Factors Gene Family AT3G19760 28.856 2.59e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00121 - - gmx:100795739 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00121 9 1426337 1432122 Vimu9g00121 9 1426337 1432122 ECH