Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00116 ATGCTACCTGATTTCCTGAAGCAAAGAATCAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTGATTCGCAACCTCCCCAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGTTTAGATCTGCTTAAAAAAGTGCCAATGTTTGAGAGCATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTAAAGCCAGTCCTGTACACAGAGAGAAGTTACATAGTCCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCAACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAATTCCTCTGAGCTCAAGGCTGGTGATTTCTGCGGAGAAGAGCTTCTGACATGGGCCTTGGACCCCAACTACTCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAGGACTTGAAAAGTGTTGCTTCCCAATTTCGACGTCTTATAAACAACAAACAACTCCAACACACTTTCAGGCAAGGATTCACCTGA 570 0.4333 MLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFESMDNQLLDALCDKLKPVLYTERSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPNYSSNLPISTRTVETISEVEAFALMPEDLKSVASQFRRLINNKQLQHTFRQGFT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00116 189 SMART cnmp_10 55 186 IPR000595 -
Vimu9g00116 189 FunFam Cyclic nucleotide-gated ion channel 1 53 171 - -
Vimu9g00116 189 CDD CAP_ED 55 184 IPR000595 -
Vimu9g00116 189 SUPERFAMILY cAMP-binding domain-like 3 173 IPR018490 -
Vimu9g00116 189 Gene3D Jelly Rolls 53 173 IPR014710 -
Vimu9g00116 189 Gene3D Helix hairpin bin 1 46 - -
Vimu9g00116 189 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 185 - -
Vimu9g00116 189 Pfam Cyclic nucleotide-binding domain 75 169 IPR000595 -
Vimu9g00116 189 ProSiteProfiles cAMP/cGMP binding motif profile. 55 139 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00116 Vimu-Chr9 1368541 1369456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00116 1 185 Ion Channels AT1G01340 77.838 7.40e-103 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00116 K05391 - gmx:100795201 358.607