Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00111 ATGGCATGTTGCGTGTGCTACAAGGACAGACTAGCCAACATTCGTAACATTGCTATTGCAAGGTCTGCACCAGCCACAGTATTACCAGCACCACAGATTGTTGCAACGGGTTTGGATGAGTCCACCATTGAGTCCTATGAGAAGGTAGTGCTTGGAGAGAGTAGAAGAGTCCCTGGACCCAACGGTGGTTGCTGTTGGATATGCTTATCAGAGTACAACAGCAAAGAGACAATACGATGCATTCCTGAATGCGAACACTGCTTCCATGCAGATTGCATAGACGAGTGGCTTCGCATCAATAACACATGCCCCGTTTGTCGTAACACTCCCTCTCCTTCTCCTCTTCATGTTGCCTCCATTAACCCCTAA 369 0.4797 MACCVCYKDRLANIRNIAIARSAPATVLPAPQIVATGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECEHCFHADCIDEWLRINNTCPVCRNTPSPSPLHVASINP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00111 122 CDD RING-H2_EL5-like 64 107 - -
Vimu9g00111 122 SMART ring_2 65 106 IPR001841 -
Vimu9g00111 122 Pfam Ring finger domain 65 107 IPR001841 -
Vimu9g00111 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 112 IPR013083 -
Vimu9g00111 122 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
Vimu9g00111 122 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 111 IPR046948 -
Vimu9g00111 122 SUPERFAMILY RING/U-box 64 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00111 Vimu-Chr9 1331701 1332069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00111 5 113 C3H Transcription Factor Family AT2G46495 60.714 1.30e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00111 - - gmx:100798415 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00111 9 1331701 1332069 Vimu9g00111 9 1331701 1332069 ECH
Vimu2g01548 2 10788253 10790496 Vimu9g00111 9 1331701 1332069 PCT