Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu9g00111 | ATGGCATGTTGCGTGTGCTACAAGGACAGACTAGCCAACATTCGTAACATTGCTATTGCAAGGTCTGCACCAGCCACAGTATTACCAGCACCACAGATTGTTGCAACGGGTTTGGATGAGTCCACCATTGAGTCCTATGAGAAGGTAGTGCTTGGAGAGAGTAGAAGAGTCCCTGGACCCAACGGTGGTTGCTGTTGGATATGCTTATCAGAGTACAACAGCAAAGAGACAATACGATGCATTCCTGAATGCGAACACTGCTTCCATGCAGATTGCATAGACGAGTGGCTTCGCATCAATAACACATGCCCCGTTTGTCGTAACACTCCCTCTCCTTCTCCTCTTCATGTTGCCTCCATTAACCCCTAA | 369 | 0.4797 | MACCVCYKDRLANIRNIAIARSAPATVLPAPQIVATGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECEHCFHADCIDEWLRINNTCPVCRNTPSPSPLHVASINP | 122 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu9g00111 | 122 | CDD | RING-H2_EL5-like | 64 | 107 | - | - | |
Vimu9g00111 | 122 | SMART | ring_2 | 65 | 106 | IPR001841 | - | |
Vimu9g00111 | 122 | Pfam | Ring finger domain | 65 | 107 | IPR001841 | - | |
Vimu9g00111 | 122 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 112 | IPR013083 | - | |
Vimu9g00111 | 122 | ProSiteProfiles | Zinc finger RING-type profile. | 65 | 107 | IPR001841 | - | |
Vimu9g00111 | 122 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 2 | 111 | IPR046948 | - | |
Vimu9g00111 | 122 | SUPERFAMILY | RING/U-box | 64 | 110 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu9g00111 | Vimu-Chr9 | 1331701 | 1332069 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu9g00111 | 5 | 113 | C3H Transcription Factor Family | AT2G46495 | 60.714 | 1.30e-39 | 133 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu9g00111 | - | - | gmx:100798415 | 216.853 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu9g00111 | 9 | 1331701 | 1332069 | Vimu9g00111 | 9 | 1331701 | 1332069 | ECH | |
Vimu2g01548 | 2 | 10788253 | 10790496 | Vimu9g00111 | 9 | 1331701 | 1332069 | PCT |