Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00110 ATGAAGGTCTTCATCAATAACATCATTATTCGTTTCCCCTTTCAACGAGAAGATGAGCAAAATCCTTATTGTGGGTATCCTGGTTTCAATTTAATTTGCACGAATAATAGCAAAGCACTGCTGAAACTTCCTCACTCTGGAGTATTCTACGTGCGCAACATTAACTACCTCGCACAAAAGATACAAGTCTACGACCCTGATGATTGCCTCCCCAAACGTCTTCTGAGCCTCAATGTCTCAGGCTCTCCTTTTATTCACACTTTTACTCGTAACTACACCTTCTTAAGCTGCACATTTCAGAACGCAGGATCACAGTTCATTCCCATTGACTGCCTCAGTAATTCCACACATTTTGTATCAGCTGTCCTTTCACTGAATTTGCCCAATCCATTACCTGCATCTTGCTACGTTATTACCAGTCTTTTTGTCCCAGTTGCAGGGCAAGAGCAGCAGTATGATGGTAATTTCACAGGTGAGTTTAGTCAAGATCTTGTATTAACATGGGATAGACCTGACTGCAGATATTGTGAATCACACGAACAATTGTGTGGGTTTGATCGAAACAACAACAATCAACTCTTCTGTTTCTCTTACCAAACAGGTAAACATCTTCTATATGGATTTATATCTAAATGA 636 0.4009 MKVFINNIIIRFPFQREDEQNPYCGYPGFNLICTNNSKALLKLPHSGVFYVRNINYLAQKIQVYDPDDCLPKRLLSLNVSGSPFIHTFTRNYTFLSCTFQNAGSQFIPIDCLSNSTHFVSAVLSLNLPNPLPASCYVITSLFVPVAGQEQQYDGNFTGEFSQDLVLTWDRPDCRYCESHEQLCGFDRNNNNQLFCFSYQTGKHLLYGFISK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00110 211 Pfam Wall-associated receptor kinase galacturonan-binding 7 65 IPR025287 GO:0030247
Vimu9g00110 211 Pfam Wall-associated receptor kinase C-terminal 132 197 IPR032872 -
Vimu9g00110 211 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 198 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00110 Vimu-Chr9 1327052 1330007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00110 6 199 C3H Transcription Factor Family AT2G46495 41.327 7.13e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00110 - - gmx:100794143 317.39