Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00109 ATGAAAACCGAAGCGCCGAACCTGAAAAGATGTAAGATTGACGGTACCGAGAATGCGATTCAGAAGAAGCGTAGGGTGAACGGGTTGTACTCGCTGGGAGTGTCGGGGGATGCTGAATATTTCAGCAGTGGTTCTGGTTCTTGGAGCAGTGAAGGATCGTATTGGGGTGGCGGTGGTGAGGTTCAGTCGAATTCGAATTCTTTTCTGTTCAATGGGAAAATGGTGAAGGAGGCATGTCGTCCTCCGCTTCTGCGGTCCTCGCGTGGACGCCTTCAGAAGCTTCCGTCCAGGTTCAATGACTCGGTTCTTGAGGCGGACGGAGACTCGAGCTTTGAAGATAACGATAAGAGTTATGTGGAGGACGGAAGGGGTGGCATTGGTGTGAGTGTGGAGAAGAGTGATAGTGTGTGTTGTTCGTCTAGTGTTGGGAGAAGGACTGGTGTTATGGCTGAGAGTAATACATCTGGGATTAGTTTTGAGGGTGTGGACCAAAAACCCAGTGGATTGAAGAAGAATGAGGTTTTCAAGCTGGAGGATTTTTCTTTGGGGGATATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTGGTGATTGATCCTGCCTTGGAAGCTCCAGAGTCCGTACTCAGCTGTTGTATTCCCGGCGCGCTCTGCGTGATGTTTTTTGGTTATTCAAAGAATGGAACTCAGAGGAGCGATGGTGTGCAGGACTATGCGTGGGTGAAGCAGGGAATGGTGTTCCCTTTCTCTGAGTTCTTGGACAGGTTTCAGGGGCAGACTCGGTTGTACAAGAGCAAACCTAGTGACTTCCGCATGGCCCTGGAGGAGGCAATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAAGAGGGGAAGTATCTGATGCAGAAGCTCATCCTGCTCAACTTATGGAGGCTACCTGCTATTATGTTGACGAAGAATACTACGGGCAGGAACAGGTTACAAGGTACTGTGCTGGTTGTGGTCTGATGTTGCCATGCAAAACCATGAAGAAGATGAAGGATTCAAATTGTGCACCCCGATTTTATTGTAAACATTGCACTAAGCTACGAAAATCAAAGCAGTATTGTGGCATTTGCAAAAGGATTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGTTGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATAACCAGCAGACTTTTCAAGGATCTGGAAAATACGGATTATTACTGTCCAGATTGCAAGGGAAAATTCAGTAGCAAATTACCAGCATCGCAAACCTACAATCCGAAAATCAAATCAATAGAGAATAGCCAAAAATCTATGATACCGGATAGTGTATTGGTGGTGTGCAAGGACATGGAAGGAATATATATCCCAAAGCTTCATCTAGTCATGTGCAATTGTGGCTCTTGTGGATCGAGGAAGCAGACACTTAGTGAATGGGAAAAACATACTGGTTGCAGAGCGAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCTCTGGAAAAATGGTTGGCTGAACACATTCCACTAGAGGGAGTATCCCAGCAGTTAGATCAGCAGCAGGTACTTGCTTTTTTGCAAGAGAAGTATGAGCCTGTTAATGCAAAATGGACAACAGAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATTTGTAACAGATGCCAAATAGCAGTCCACCAAGAGTGCTATGGGGCAAAAAATGTTCAGGATTTAACTTCTTGGGTTTGTAGAGTATGTGAAACTCCCGATGTTGAGAGAGAGTGTTGCCTCTGCCCATACACTATGGATTCGGCATTCTTAAAAGGAGGTGGTGCTCTAAAGCCAACGGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAGACCATGAGGCCATGGAACCTGCTGTGGGAATCCTTAAAATTCCTCCTAATTCGTTTGTGAAGAGCCATGGTTCCTGTATAACTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGTGCATCAAGGGCAGGATATACAATGGAATTGCATTCCATGGAGAAGAATGGGAATCAAATAACAAAGAAGCTAATATATTGTTCAGTTCACAGGGTCCCAAATCCAGATTCTGTACTGGTCGTACACACACCCCTGGGGATTTTCTCTCCCAGAACTTCACTTCAAAATCAGAAGGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAGAATATAGAGCTTATTGAATCTTCAACCACTGAAAATGAGGTCGTTGAGCCACTATCTGCTGCTAGATGTCGAGTCTACCGTAGGTCTACTAATAAGAGAGCCAATGAGCCAATAATTCACTTGCCTAAGGGACCCGGCCTTCATTCTTTAGATGCAATAACTCTGTTGAACGACTTTAAGGATGGTGATGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTACGGGAAATGGAAAAATTGAGAGTTTGCTTTGGAAAATCGGGCATTCATGGATGGGGCCTCTTTGCTCGTAGAAATATACAAGAAGGAGAGATGGTTGTTGAATATCGGGGTGTGAATGTAAGGCGTAGTGTTGCTGATTTGAGGGAAGCAAAATATCGTTCGGAAGGCAAAGATTGCTATCTGTTCAAGATTAGCGAGGAAGTGGTAGTTGATGCAACTAACGTGGGCAATATTGCACGCTTAATAAATCATTCTTGCATGCCAAACTGCTACGCAAGGATAATGAGTCTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACTAATGTTTCTGCTGGTGAAGAACTAACGTATGACTACTTGTTCGATCCAGACGAGCGGGATGACCTGAAAGTTCCTTGCCTTTGCAAAGCCCCCAATTGTAGGAGATTTATGAATTAG 2958 0.4442 MKTEAPNLKRCKIDGTENAIQKKRRVNGLYSLGVSGDAEYFSSGSGSWSSEGSYWGGGGEVQSNSNSFLFNGKMVKEACRPPLLRSSRGRLQKLPSRFNDSVLEADGDSSFEDNDKSYVEDGRGGIGVSVEKSDSVCCSSSVGRRTGVMAESNTSGISFEGVDQKPSGLKKNEVFKLEDFSLGDIVWAKCGKRYPAWPAVVIDPALEAPESVLSCCIPGALCVMFFGYSKNGTQRSDGVQDYAWVKQGMVFPFSEFLDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGRGEVSDAEAHPAQLMEATCYYVDEEYYGQEQVTRYCAGCGLMLPCKTMKKMKDSNCAPRFYCKHCTKLRKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKITSRLFKDLENTDYYCPDCKGKFSSKLPASQTYNPKIKSIENSQKSMIPDSVLVVCKDMEGIYIPKLHLVMCNCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWLAEHIPLEGVSQQLDQQQVLAFLQEKYEPVNAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDLTSWVCRVCETPDVERECCLCPYTMDSAFLKGGGALKPTDVEMLWVHVTCAWFRPQVVFQDHEAMEPAVGILKIPPNSFVKSHGSCITCCKCATYFHVMCASRAGYTMELHSMEKNGNQITKKLIYCSVHRVPNPDSVLVVHTPLGIFSPRTSLQNQKGCFRGSRLISSKNIELIESSTTENEVVEPLSAARCRVYRRSTNKRANEPIIHLPKGPGLHSLDAITLLNDFKDGDESKVFTSFKERLHHLREMEKLRVCFGKSGIHGWGLFARRNIQEGEMVVEYRGVNVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATNVGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDDLKVPCLCKAPNCRRFMN 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00109 985 ProSitePatterns Zinc finger PHD-type signature. 553 598 IPR019786 -
Vimu9g00109 985 SMART PostSET_3 969 985 IPR003616 -
Vimu9g00109 985 Pfam PHD-finger 368 421 IPR019787 -
Vimu9g00109 985 SUPERFAMILY SET domain 841 981 IPR046341 -
Vimu9g00109 985 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 985 IPR025780 -
Vimu9g00109 985 Pfam PHD-zinc-finger like domain 606 719 - -
Vimu9g00109 985 SUPERFAMILY FYVE/PHD zinc finger 551 611 IPR011011 -
Vimu9g00109 985 FunFam Histone-lysine N-methyltransferase 818 985 - -
Vimu9g00109 985 ProSiteProfiles Post-SET domain profile. 969 985 IPR003616 -
Vimu9g00109 985 Gene3D SET domain 822 985 IPR046341 -
Vimu9g00109 985 Gene3D - 169 290 - -
Vimu9g00109 985 SUPERFAMILY Tudor/PWWP/MBT 175 311 - -
Vimu9g00109 985 CDD SET_SETD1-like 832 981 - -
Vimu9g00109 985 SMART set_7 843 966 IPR001214 GO:0005515
Vimu9g00109 985 Pfam PHD-finger 565 599 - -
Vimu9g00109 985 CDD PWWP_AtATX3-like 183 287 - -
Vimu9g00109 985 ProSiteProfiles SET domain profile. 843 960 IPR001214 GO:0005515
Vimu9g00109 985 ProSiteProfiles PWWP domain profile. 182 256 IPR000313 -
Vimu9g00109 985 ProSiteProfiles Zinc finger PHD-type profile. 550 601 IPR019787 -
Vimu9g00109 985 ProSiteProfiles Zinc finger PHD-type profile. 366 422 IPR019787 -
Vimu9g00109 985 PANTHER PHD FINGER PROTEINS 76 400 - -
Vimu9g00109 985 SMART PHD_3 368 420 IPR001965 -
Vimu9g00109 985 SMART PHD_3 670 720 IPR001965 -
Vimu9g00109 985 SMART PHD_3 552 599 IPR001965 -
Vimu9g00109 985 SUPERFAMILY FYVE/PHD zinc finger 366 425 IPR011011 -
Vimu9g00109 985 CDD PHD_ATX3_4_5_like 552 598 IPR042011 -
Vimu9g00109 985 SMART PWWP_4 180 254 IPR000313 -
Vimu9g00109 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 721 IPR013083 -
Vimu9g00109 985 FunFam Histone-lysine N-methyltransferase 602 722 - -
Vimu9g00109 985 Pfam PWWP domain 183 284 IPR000313 -
Vimu9g00109 985 CDD PHD_TCF19_like 369 419 - -
Vimu9g00109 985 Pfam SET domain 854 959 IPR001214 GO:0005515
Vimu9g00109 985 ProSiteProfiles Extended PHD (ePHD) domain profile. 604 720 IPR034732 -
Vimu9g00109 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 539 601 IPR013083 -
Vimu9g00109 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 425 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00109 Vimu-Chr9 1314875 1322846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00109 332 405 EF-hand Containing Proteins AT5G28340 54.054 1.19e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu9g00109 zf-HC5HC2H_2 6.1e-18 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00109 - - gmx:100797346 1744.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00109 9 1314875 1322846 Vimu9g00109 9 1314875 1322846 ECH