Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00106 CACCATTTTCCTTCTTTTATATACAATCCATCAGAACCACCCATCACCATCTTTACCGGTGACATTTCTTCATTTCTGGCTCCAACTATACGCATGGCATCTGAGACTCAGAGGGCTCCTATGTTGCCGAACTCCTTTTTTAAAGTTATTCTTAGAACGAATCTTCAAACCGTTAAAATACCAAATATGTTTACTGCCAAATATGGAGATGATCTCCCAAATCCTTTCTTCATGAACCTTCCAAATCAAACTCAATGGAAAGTGATTTGGGAAAATGAAAACGGTGAGATTTGGTTGAAAGAGGGGTGGAATGAATTTACGGAACATCATTCCTTGGACCACGGAGATCTTGTTTTATTTGAATATCTCCTTCCTTCAATTCATTTTCCGTAA 393 0.3817 HHFPSFIYNPSEPPITIFTGDISSFLAPTIRMASETQRAPMLPNSFFKVILRTNLQTVKIPNMFTAKYGDDLPNPFFMNLPNQTQWKVIWENENGEIWLKEGWNEFTEHHSLDHGDLVLFEYLLPSIHFP 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00106 130 SUPERFAMILY DNA-binding pseudobarrel domain 45 123 IPR015300 -
Vimu9g00106 130 CDD B3_DNA 45 122 IPR003340 GO:0003677
Vimu9g00106 130 SMART B3_2 46 130 IPR003340 GO:0003677
Vimu9g00106 130 Pfam B3 DNA binding domain 53 122 IPR003340 GO:0003677
Vimu9g00106 130 PANTHER B3 DOMAIN-CONTAINING 45 124 - -
Vimu9g00106 130 Gene3D - 40 129 IPR015300 -
Vimu9g00106 130 ProSiteProfiles B3 DNA-binding domain profile. 43 130 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00106 Vimu-Chr9 1265130 1265610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00106 42 122 B3 DNA Binding Superfamily AT3G18990 29.762 4.62e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu9g00106 B3 1.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00106 - - vra:106773407 185.267