Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00086 ATGAAGATTGAGGTGGGGTTGGGAGGGGTATGGAATGAGGAAGAGAAAGCGACGGTGGTGGAGGTTCTGGGTCGCGGTGCGTTTGATTACTTGGTGGCGAACTCGGTTTCTAACGAGAATCTGTTAATGGCGTTTGGGAGCGGCGAGAATCTGCAGAATAAGCTTTCGGATCTCGTGGAGCGTCCTAACGCGTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTTTGGGGATTGGGTATTGGGGTGGGGAGATGGCTGTTGCAGGGAACCCCGGGAGGGAGAAGAGAGCGGAGAAGTGAGAGGGAGAGGAGTTGTTGCTGACGACGAGAAGGTGCAGAGGATGAGGAAGAGGGTGTTGCAAAAGCTGCACATGACTTTTGGGGGTTCTGACGAAGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTTTCTTTTCCCCGAGGATTAGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGCTCTCGGATGTGTTCAAATCTAGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTACCTACTGATATGGGGGTGGTGGAGATGGGCTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTTTGAAGTCTGTGTTTTCTGCACAGGCATCCATGGTCCCTCCCAGGGTTAAGCCAATTGCACCATTTGATTTGGTGAGTGAGAAGAGAGATGAGAATGCAAATGCCCCTTTTTCTGGTGTGGCAATTGGGGATAAGGAAAAGAATAACAACAGCAATGGTAGTAATAATAGAGTAGAAGGAAACGGAGTTCCAAAGATTTTTGGACAAGATTTGAACAGTGTGACTCAATTCAGGGAAAAACTTGCTGTGAGGAAAATGGAAGAGAGGCCAAGGATGTGGGGAGCTCATCCCAATGGGAATAGTGTTGGTTTTCCAAATGGTATCCATGGTTCTGGTTGGGGGGGCGGTCAAGTTGTTAGGCAGCTTGCTCCTCCTGAAATTCATGCTCCTAGGTTGTCCCCCTCCGGTGTATTGTCGGTGCCGGAGCTGGGCAATGGCACAAGGCATGATTTTGTGCATAACAATTATCAGCAGCAACGGAGGTCTCAGATGCAAATTGATTTCTCAGGAGCAACTTCAAGGGCTTCAGGAAGATCAACCATTGCTGAATCTGAGATTTCTGATGTTGAGGCATCGTGCAAGGAGGAGAGAACCAATGTTGCCGATGACCGGAGGCCGAGAAAACGGGGAAGGAAGCCTGCCAATGGAAGGGAGGAGCCCCTCAACCATGTGGAGGCAGAGAGGCAAAGGAGGGAGAAGCTGAACCAGCGGTTCTATGCCCTGCGTGCGGTTGTTCCAAACATCTCCAAGATGGACAAAGCATCTCTATTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACAATGGAGTCTGAGAGAGAGAGATTTGGAATCACCTCTATGGATGGATCAGTGGTGGAGGCCAATGCAAGATCAGAAAATCATAGTAATGGAATTCCTGATGTGGATGTTCAAGCTGCACAAGATGGGGTGGTAGTAAAGGTGAGCTGCCCTATTGATGTTCACCCGGTTTCAAAAGTCATTCAAACCTTCAAAGAAGCAGATATTGGTGTTGTTGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTCAGGGACCTGATCAGCTGACCAAGGAAAAGTTAATTGCATTGTTTTCCAAAGAATCCAACCCCATACAGACATTGTGA 1869 0.4746 MKIEVGLGGVWNEEEKATVVEVLGRGAFDYLVANSVSNENLLMAFGSGENLQNKLSDLVERPNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEESGEVRGRGVVADDEKVQRMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVFKSSFDYCVRSFLAKSAGIQTVVLVPTDMGVVEMGSVRMVGESFELLQALKSVFSAQASMVPPRVKPIAPFDLVSEKRDENANAPFSGVAIGDKEKNNNSNGSNNRVEGNGVPKIFGQDLNSVTQFREKLAVRKMEERPRMWGAHPNGNSVGFPNGIHGSGWGGGQVVRQLAPPEIHAPRLSPSGVLSVPELGNGTRHDFVHNNYQQQRRSQMQIDFSGATSRASGRSTIAESEISDVEASCKEERTNVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGITSMDGSVVEANARSENHSNGIPDVDVQAAQDGVVVKVSCPIDVHPVSKVIQTFKEADIGVVDSKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKESNPIQTL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00086 622 PANTHER MYC 39 610 IPR045084 GO:0003700|GO:0006355
Vimu9g00086 622 MobiDBLite consensus disorder prediction 402 420 - -
Vimu9g00086 622 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 239 IPR025610 -
Vimu9g00086 622 Gene3D - 445 516 IPR036638 GO:0046983
Vimu9g00086 622 CDD bHLH_AtAIB_like 449 519 - -
Vimu9g00086 622 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 455 516 IPR036638 GO:0046983
Vimu9g00086 622 MobiDBLite consensus disorder prediction 269 298 - -
Vimu9g00086 622 MobiDBLite consensus disorder prediction 402 463 - -
Vimu9g00086 622 MobiDBLite consensus disorder prediction 278 293 - -
Vimu9g00086 622 Pfam Helix-loop-helix DNA-binding domain 456 502 IPR011598 GO:0046983
Vimu9g00086 622 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Vimu9g00086 622 FunFam Transcription factor bHLH13 445 518 - -
Vimu9g00086 622 SMART finulus 458 507 IPR011598 GO:0046983
Vimu9g00086 622 Coils Coil 491 518 - -
Vimu9g00086 622 MobiDBLite consensus disorder prediction 422 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00086 Vimu-Chr9 1059287 1061155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00086 10 621 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.077 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g00086 bHLH-MYC_N 3.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00086 - - gmx:100807078 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00086 9 1059287 1061155 Vimu9g00086 9 1059287 1061155 ECH
Vimu2g01537 2 10698409 10702337 Vimu9g00086 9 1059287 1061155 PCT