Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00083 ATGGACCAACCGCCGCACCACCTAGGCAGCGCCGCCACTACCTCCTCCGATAAGCCCGCCACGCAGCGAGGCGGCACGCGTCATCCGCTCTTCCGTGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTGTCCGAAATCCGGGAGCCGCGCAAGAAGTCGCGCATATGGCTGGGCTCCTTCCCGGCACCGGAGATGGCGGCCAAGGCCTACGATGTCGCAGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCTTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCCGCCCACATGATGATAGTCCAGGCCGCCGCCTCCGCCCCCGACTCTTCGGAGAAGAGCAGCATTACCTCCGGCTGCGACCACGCAGCCGATGACTTCTGGCGAGAGATTGAGCTGCCGGAGCTCCTCCACAGCAAGTGGTGGACCTCTTCCGCCGACTCCTCGCCGTGGACGGAGGATGACCTCCCGCCGCAGCAACCCTTCACCACGGCGTGCTTGTAG 555 0.6775 MDQPPHHLGSAATTSSDKPATQRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAAHMMIVQAAASAPDSSEKSSITSGCDHAADDFWREIELPELLHSKWWTSSADSSPWTEDDLPPQQPFTTACL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00083 184 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Vimu9g00083 184 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Vimu9g00083 184 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Vimu9g00083 184 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Vimu9g00083 184 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Vimu9g00083 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 157 - -
Vimu9g00083 184 MobiDBLite consensus disorder prediction 1 32 - -
Vimu9g00083 184 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Vimu9g00083 184 MobiDBLite consensus disorder prediction 8 22 - -
Vimu9g00083 184 MobiDBLite consensus disorder prediction 165 184 - -
Vimu9g00083 184 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Vimu9g00083 184 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Vimu9g00083 184 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00083 Vimu-Chr9 1005853 1006407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00083 26 184 AP2-EREBP Transcription Factor Family AT1G01250 58.537 1.09e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu9g00083 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00083 K09286 - gmx:100802845 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00083 9 1005853 1006407 Vimu9g00083 9 1005853 1006407 ECH
Vimu2g01535 2 10672312 10673041 Vimu9g00083 9 1005853 1006407 PCT