Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00074 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTAGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTGAGACCTGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATAAGAATGCATTCACTTTTGGGGAATAGATGGTCCCTCATAGCAGGAAGATTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAATACCCATCTCTGCAAAAAGCTGAAAAATCAAACAGGAGAAGATACTGAGACACCCAATTCCTTGGAGAGTCCTCAGGAAGAACCTGCAAGTGGCAGCAAAAAGAAGAAGAACGGTGGCAAAAAGAAGAACAAGCAGAAGAAGAACAAAGGAGACAAAGATAATGCAGAGCCACCAAAGACACAAGTTTACCTACCAAAACCAATCAGAGTGAAGGCTTTGTATTTGCCAAGAACAGATAGTAATAACACATACACCTTTGATTCAAACTCGGCAAGTGCATCAACAAACCAAGAAAAGGAAGAAAGCCCCTTGACAAAAGAATCAAACTTGGCTAGTGAATTTGGAAATGTGGGAGAAAGTGATGATTTTGGCTTCTTCAGTGAGGAACATGACTTGGTCAATGCCTCTGATATGGAATGCCACTCTTACTTTCCTTCAGATCATTGCTCTCTGCAACAACTCTACGAAGAATATTACCACCTTCTGAACATGGATCATAGCCAATTCATCGAAATGAGTTCATTTGGGGAATCTTTATTGGTGTGA 873 0.4021 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKNQTGEDTETPNSLESPQEEPASGSKKKKNGGKKKNKQKKNKGDKDNAEPPKTQVYLPKPIRVKALYLPRTDSNNTYTFDSNSASASTNQEKEESPLTKESNLASEFGNVGESDDFGFFSEEHDLVNASDMECHSYFPSDHCSLQQLYEEYYHLLNMDHSQFIEMSSFGESLLV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00074 290 MobiDBLite consensus disorder prediction 188 208 - -
Vimu9g00074 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu9g00074 290 MobiDBLite consensus disorder prediction 122 136 - -
Vimu9g00074 290 Gene3D - 69 134 - -
Vimu9g00074 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu9g00074 290 CDD SANT 16 61 IPR001005 -
Vimu9g00074 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu9g00074 290 MobiDBLite consensus disorder prediction 188 216 - -
Vimu9g00074 290 MobiDBLite consensus disorder prediction 119 176 - -
Vimu9g00074 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu9g00074 290 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu9g00074 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu9g00074 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Vimu9g00074 290 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu9g00074 290 FunFam Myb transcription factor 11 67 - -
Vimu9g00074 290 CDD SANT 71 112 IPR001005 -
Vimu9g00074 290 Gene3D - 14 66 - -
Vimu9g00074 290 SMART sant 66 114 IPR001005 -
Vimu9g00074 290 SMART sant 13 63 IPR001005 -
Vimu9g00074 290 FunFam MYB transcription factor 68 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00074 Vimu-Chr9 906115 907162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00074 4 142 MYB Transcription Factor Family AT3G13540 64.583 3.25e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu9g00074 Myb_DNA-binding 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00074 K09422 - gmx:100803345 465.692