LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu9g00071	ATGGGAGACCCATCTGCCACTAGAATGAATTCTGGTGCTGTCTTGACACTGCCTCCCGTGTGCAATGCGTTCGGGACCAGGGAGCCTCAGGATTTTGAGGACGAGTTTGCGGAGAAAGATCCAACCGGGCGGTATACAAGGTTTGATTTTTTCTCTCTCTTTTGTTTGTCTCAGTATACTGAAGTCTTGGGAAGGGGTGCCTTCAAAACTGTTTATAGGGCCTTTGATGAAGTTGATGGAATTGAAGTTGCTTGGAATCAAGTTAAGATTGATGGCCTCTTGCATTCAGTAGATGATCTTGCGAAATTGTATTCTGAAGTTAATCTTTTGAAGTCTTTGAAACATGACAATATCATTAAGTTCTGTGATTCTTGGATTGATGATAAGGAGAAAACTGTTAACATGATTACTGAACTGTTCACATCAGGAAATTTAAGGCAATATCGCAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTCATGGCTTACTATATCTTCATAGTCACAAGCCACCCATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAGGGTGAAGTTAAGATAGGGGATCTTGGTTTGGCAATTGTCATGCAGCAACCTACCGCCCGAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCATACACAGAACTGGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTCACTTTTGAGTATCCCTATGCCGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTCACCTCAGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGATCCTCAAATTAGGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTGAAAGATCCATTTCTACAAGTTGAGAATTCAAAGGATCCCGTCCTTTATCCTTTACAACCACCTAGAAGAACTCTGAGAGCGTACTCATTCAAGTCTAGTTCTCATTCTATGGACTTGGATGGTGACTACAAACAGTTTTCTATGAGTATCTGTTCCGAAAGCAACCAAGAAAGCCCATATTGTCCTGTTTTTGAGGTTCAGAGGGCAAATATTAACAATGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTGAGGAACATACATTTTCTCTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCACGGAGATGGTTGAACATTTGGAGCTGGCAGATCACGATGTACCTTTCATAGCTGAGCTTATTGATTATTTGATAATGAAACTTCTCCCTTGGTGGAATCCTTCGCATGATCGTTGGGCATGTGGTGAAATAAATCCTAATATAGATTCCCAAAGCTTCATGGGATGGCCATGGGCTTCTGCCCTACCAAGTCTTCCCTCTGAGTTGGCTATTGAGGAGGATGGCTACTCTGGGATTGATACAACCCCCAAAGAAGATTTTGTGGCAGCTGAGAAGAACAGCTTAACAGAAAGTGGTGATAAGGCTACTTTTGAGGGTGATTATCATTCACAAAGATCTGAAGCTTCTGAGGTAGTTGTTGAGAATGCTTCTATGAAAGATGACAATTGTCATTATTCCAGTGTTGATGCAAGCTCTAAGTGCTTAAGTAGTAGGTCCATCTCTGACCTTGAACTTGAGGATGAATATTTTGAGGACTGTAAATTGCAACAAGAAAATTATTCTTCTGGGGAAGAAGTTGTGATAAATGAATACCCAGCGAACTCAGGGTCAGTGCTTGGAACATCTACTAATGTTGGGACCCCAAGAAGTAGCTGTTCTTATGTGTCTTCAACAGTAGAAGAGATTGATCTTGAGCTACAGTTTGAACTTGCTGTAATTGAGACTCACTATCAGCATTGGATTGATGAACTCAACAAAATGAAGTTGGAGGCACTGGAATCCACCAGAAGGAGATGGATGGCCAAGAAGAAACTGGCTGTTCGGTGA	2049	0.4124	MGDPSATRMNSGAVLTLPPVCNAFGTREPQDFEDEFAEKDPTGRYTRFDFFSLFCLSQYTEVLGRGAFKTVYRAFDEVDGIEVAWNQVKIDGLLHSVDDLAKLYSEVNLLKSLKHDNIIKFCDSWIDDKEKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILHGLLYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTFEYPYAECKNPAQIFKKVTSGIKPASLNKVSDPQIREFIEKCLVPASERLSAEELLKDPFLQVENSKDPVLYPLQPPRRTLRAYSFKSSSHSMDLDGDYKQFSMSICSESNQESPYCPVFEVQRANINNEFRLKGTKNDDNSVSLTLRIADTCGRVRNIHFLFYLDSDTAVSVATEMVEHLELADHDVPFIAELIDYLIMKLLPWWNPSHDRWACGEINPNIDSQSFMGWPWASALPSLPSELAIEEDGYSGIDTTPKEDFVAAEKNSLTESGDKATFEGDYHSQRSEASEVVVENASMKDDNCHYSSVDASSKCLSSRSISDLELEDEYFEDCKLQQENYSSGEEVVINEYPANSGSVLGTSTNVGTPRSSCSYVSSTVEEIDLELQFELAVIETHYQHWIDELNKMKLEALESTRRRWMAKKKLAVR	682

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu9g00071	682	FunFam	Probable serine/threonine-protein kinase WNK1	31	138	-	-
Vimu9g00071	682	CDD	STKc_WNK	44	314	-	-
Vimu9g00071	682	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	397	452	IPR024678	GO:0004674\|GO:0005524
Vimu9g00071	682	ProSiteProfiles	Protein kinase domain profile.	57	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vimu9g00071	682	Pfam	Protein kinase domain	60	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vimu9g00071	682	Gene3D	Phosphorylase Kinase; domain 1	30	138	-	-
Vimu9g00071	682	FunFam	probable serine/threonine-protein kinase WNK9	140	319	-	-
Vimu9g00071	682	SMART	serkin_6	57	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vimu9g00071	682	Gene3D	Transferase(Phosphotransferase) domain 1	140	320	-	-
Vimu9g00071	682	SUPERFAMILY	Protein kinase-like (PK-like)	60	370	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu9g00071	Vimu-Chr9	850669	854308	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu9g00071	33	463	MAP Kinase Kinase Kinase	AT5G41990	60.789	3.95e-171	499

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Vimu9g00071		Pkinase	1.2e-51	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu9g00071	K08867		-	gmx:100809602	1082.4

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu9g00071	9	850669	854308	Vimu9g00071	9	850669	854308	ECH

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