Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00071 ATGGGAGACCCATCTGCCACTAGAATGAATTCTGGTGCTGTCTTGACACTGCCTCCCGTGTGCAATGCGTTCGGGACCAGGGAGCCTCAGGATTTTGAGGACGAGTTTGCGGAGAAAGATCCAACCGGGCGGTATACAAGGTTTGATTTTTTCTCTCTCTTTTGTTTGTCTCAGTATACTGAAGTCTTGGGAAGGGGTGCCTTCAAAACTGTTTATAGGGCCTTTGATGAAGTTGATGGAATTGAAGTTGCTTGGAATCAAGTTAAGATTGATGGCCTCTTGCATTCAGTAGATGATCTTGCGAAATTGTATTCTGAAGTTAATCTTTTGAAGTCTTTGAAACATGACAATATCATTAAGTTCTGTGATTCTTGGATTGATGATAAGGAGAAAACTGTTAACATGATTACTGAACTGTTCACATCAGGAAATTTAAGGCAATATCGCAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTCATGGCTTACTATATCTTCATAGTCACAAGCCACCCATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAGGGTGAAGTTAAGATAGGGGATCTTGGTTTGGCAATTGTCATGCAGCAACCTACCGCCCGAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCATACACAGAACTGGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTCACTTTTGAGTATCCCTATGCCGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTCACCTCAGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGATCCTCAAATTAGGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTGAAAGATCCATTTCTACAAGTTGAGAATTCAAAGGATCCCGTCCTTTATCCTTTACAACCACCTAGAAGAACTCTGAGAGCGTACTCATTCAAGTCTAGTTCTCATTCTATGGACTTGGATGGTGACTACAAACAGTTTTCTATGAGTATCTGTTCCGAAAGCAACCAAGAAAGCCCATATTGTCCTGTTTTTGAGGTTCAGAGGGCAAATATTAACAATGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTGAGGAACATACATTTTCTCTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCACGGAGATGGTTGAACATTTGGAGCTGGCAGATCACGATGTACCTTTCATAGCTGAGCTTATTGATTATTTGATAATGAAACTTCTCCCTTGGTGGAATCCTTCGCATGATCGTTGGGCATGTGGTGAAATAAATCCTAATATAGATTCCCAAAGCTTCATGGGATGGCCATGGGCTTCTGCCCTACCAAGTCTTCCCTCTGAGTTGGCTATTGAGGAGGATGGCTACTCTGGGATTGATACAACCCCCAAAGAAGATTTTGTGGCAGCTGAGAAGAACAGCTTAACAGAAAGTGGTGATAAGGCTACTTTTGAGGGTGATTATCATTCACAAAGATCTGAAGCTTCTGAGGTAGTTGTTGAGAATGCTTCTATGAAAGATGACAATTGTCATTATTCCAGTGTTGATGCAAGCTCTAAGTGCTTAAGTAGTAGGTCCATCTCTGACCTTGAACTTGAGGATGAATATTTTGAGGACTGTAAATTGCAACAAGAAAATTATTCTTCTGGGGAAGAAGTTGTGATAAATGAATACCCAGCGAACTCAGGGTCAGTGCTTGGAACATCTACTAATGTTGGGACCCCAAGAAGTAGCTGTTCTTATGTGTCTTCAACAGTAGAAGAGATTGATCTTGAGCTACAGTTTGAACTTGCTGTAATTGAGACTCACTATCAGCATTGGATTGATGAACTCAACAAAATGAAGTTGGAGGCACTGGAATCCACCAGAAGGAGATGGATGGCCAAGAAGAAACTGGCTGTTCGGTGA 2049 0.4124 MGDPSATRMNSGAVLTLPPVCNAFGTREPQDFEDEFAEKDPTGRYTRFDFFSLFCLSQYTEVLGRGAFKTVYRAFDEVDGIEVAWNQVKIDGLLHSVDDLAKLYSEVNLLKSLKHDNIIKFCDSWIDDKEKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILHGLLYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTFEYPYAECKNPAQIFKKVTSGIKPASLNKVSDPQIREFIEKCLVPASERLSAEELLKDPFLQVENSKDPVLYPLQPPRRTLRAYSFKSSSHSMDLDGDYKQFSMSICSESNQESPYCPVFEVQRANINNEFRLKGTKNDDNSVSLTLRIADTCGRVRNIHFLFYLDSDTAVSVATEMVEHLELADHDVPFIAELIDYLIMKLLPWWNPSHDRWACGEINPNIDSQSFMGWPWASALPSLPSELAIEEDGYSGIDTTPKEDFVAAEKNSLTESGDKATFEGDYHSQRSEASEVVVENASMKDDNCHYSSVDASSKCLSSRSISDLELEDEYFEDCKLQQENYSSGEEVVINEYPANSGSVLGTSTNVGTPRSSCSYVSSTVEEIDLELQFELAVIETHYQHWIDELNKMKLEALESTRRRWMAKKKLAVR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00071 682 FunFam Probable serine/threonine-protein kinase WNK1 31 138 - -
Vimu9g00071 682 CDD STKc_WNK 44 314 - -
Vimu9g00071 682 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 397 452 IPR024678 GO:0004674|GO:0005524
Vimu9g00071 682 ProSiteProfiles Protein kinase domain profile. 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00071 682 Pfam Protein kinase domain 60 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00071 682 Gene3D Phosphorylase Kinase; domain 1 30 138 - -
Vimu9g00071 682 FunFam probable serine/threonine-protein kinase WNK9 140 319 - -
Vimu9g00071 682 SMART serkin_6 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00071 682 Gene3D Transferase(Phosphotransferase) domain 1 140 320 - -
Vimu9g00071 682 SUPERFAMILY Protein kinase-like (PK-like) 60 370 IPR011009 -
Vimu9g00071 682 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 28 564 - -
Vimu9g00071 682 Gene3D - 394 474 - -
Vimu9g00071 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00071 Vimu-Chr9 850669 854308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00071 33 463 MAP Kinase Kinase Kinase AT5G41990 60.789 3.95e-171 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu9g00071 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00071 K08867 - gmx:100809602 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00071 9 850669 854308 Vimu9g00071 9 850669 854308 ECH