Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00068 ATGCTGATGTCTTTCATAATCATTTATGCCTCTAATACTAGTTTTGTTTCAGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGGAGGCTATCTGTGGAGTGGGCTAGGGGTGAACGAGGTCGTCATCGTGATGGTTCAAAGGCAAACCAGAGGCCAACAAAAACCCTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGGGATATAGAAAAACACTTTGAACCATATGGAAATGTTCTTCATGTTCGGATTCGCCGGAACTTTGCTTTTGTGCAGTTTGAAACTCAAGAAGATGCCACTAAAGCATTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACAATTATGATAGTCCTAGGAGAGGAGGTTATGATAGATCACCCAGCCCAGTTTATCACAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCGGACAGGCGGAGGAGTCCTGATTATGGCAGACACAGAAGTCCTGATTATGGAAGGCGTAGGAGTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGAAAGCCTAGGAGTCCTGACTATGTGAAGCCGAGGAGTCCTGATTTTGGCAAGCCGAGGAGTCCTGATTTTGGGAAGCCGAGGAGTCCTGAATATGGTAGATATCGCAGCCGTTCTCCAGTGCGCAGGTCTAGAACGTAA 813 0.4625 MLMSFIIIYASNTSFVSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRRSPDYGRHRSPDYGRRRSPDYGRRRSPDYGKPRSPDYVKPRSPDFGKPRSPDFGKPRSPEYGRYRSRSPVRRSRT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00068 270 Gene3D - 3 66 IPR012677 -
Vimu9g00068 270 SMART rrm1_1 74 140 IPR000504 GO:0003723
Vimu9g00068 270 SUPERFAMILY RNA-binding domain, RBD 4 147 IPR035979 GO:0003676
Vimu9g00068 270 CDD RRM2_AtRSp31_like 74 143 - -
Vimu9g00068 270 MobiDBLite consensus disorder prediction 188 262 - -
Vimu9g00068 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 144 IPR000504 GO:0003723
Vimu9g00068 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 56 IPR000504 GO:0003723
Vimu9g00068 270 Gene3D - 67 153 IPR012677 -
Vimu9g00068 270 MobiDBLite consensus disorder prediction 146 270 - -
Vimu9g00068 270 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 19 88 - -
Vimu9g00068 270 FunFam Serine/arginine-rich splicing factor RS31 65 155 - -
Vimu9g00068 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 43 IPR000504 GO:0003723
Vimu9g00068 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00068 Vimu-Chr9 812504 813597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00068 18 146 Eukaryotic Initiation Factors Gene Family AT1G49760 25.874 1.57e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00068 K12893 - gmx:100797709 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00068 9 812504 813597 Vimu9g00068 9 812504 813597 ECH