Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00064 ATGGATGATGTTGGCGCTGTTGAGAGTTTACTGGAGCGTAGTTCACACGTCCAACTTGCTGATGGATCTCTGGTTCCAATAGATAATCAATGTAGAGAACTACTTCTTCAAAGACTCCAGGAGATGAGTTCGAAGGGATTGCGTTGCTTGGGTTTTTCATACAAAGATGAATTAGGAGAATTTTCAGACTATTATGCTGATACACATCCTGCTCACAAGAAGTTGCTTGATCCAATTTACTATTCATCCATTGAAAGGCAAAGTTTGACTGGTAAAGAATTCATCACTCTTCGTCATTCAGAACAAGTTAAAATATTGTTGAGACCAGGAGGAAAGGTTTTCTCTCGAGCTGAACCTAGACACAAGCAAGAAATTGTTAGACTACTGAAGGAAATGGGGGAGATCGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTAGCCGACATAGGGATTGCCATGGGCATTGCTGGGACAGAGGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTTTTGTGGTACACTCAAGCATCTTTTCTTGGAATCAATCTTGTGAGTGATGGTCACACAATTATAGAATTCTCCCAACTTCGAAACTGGGGGGAGTGTCCCTCATGGTCTAATTTCACTGTTGCTCCATTTGATGTTGGAGGAGGTCGCTTGATCACCTTTTCAGATCCTTGTGACTATTTCTCAGTTGGCAAAGTAAAGGCCATGACTCTCTCTCTCTCAGTCTTGGTGGCAATTGAGATGTTTAACTCTTTGAATGCCCTCTCAGAAGATAATAGCTTGAGGAAACTACCACCTTGGAGGAACCCTTGGCTTTTGGTAGCCATGTCAATATCATTTGGACTCCATTGCCTCATACTCTACACCCCATTCCTTGCAGAAGTGTTTGGAGTTATTCCTCTTAGTTTTAATGAGTGGTTTATGGTCCTCTTAATATCAGCACCTGTTATTCTTATTGACGAGATTCTGAAGTTAGTAGCGAGGAGTCAAAGGAGGTTGATAAAAGAGAAAAAGGCATGA 1053 0.4188 MDDVGAVESLLERSSHVQLADGSLVPIDNQCRELLLQRLQEMSSKGLRCLGFSYKDELGEFSDYYADTHPAHKKLLDPIYYSSIERQSLTGKEFITLRHSEQVKILLRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGIAGTEVIGSYVGLATVGIFVLWYTQASFLGINLVSDGHTIIEFSQLRNWGECPSWSNFTVAPFDVGGGRLITFSDPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLRKLPPWRNPWLLVAMSISFGLHCLILYTPFLAEVFGVIPLSFNEWFMVLLISAPVILIDEILKLVARSQRRLIKEKKA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00064 350 Pfam Cation transporting ATPase, C-terminus 166 337 IPR006068 -
Vimu9g00064 350 Gene3D - 84 163 IPR023214 -
Vimu9g00064 350 Pfam haloacid dehalogenase-like hydrolase 112 153 - -
Vimu9g00064 350 NCBIfam HAD-IC family P-type ATPase 22 159 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu9g00064 350 Gene3D - 4 76 IPR023299 GO:0000166
Vimu9g00064 350 Gene3D - 164 341 - -
Vimu9g00064 350 SUPERFAMILY HAD-like 15 166 IPR036412 -
Vimu9g00064 350 SUPERFAMILY Calcium ATPase, transmembrane domain M 166 341 IPR023298 -
Vimu9g00064 350 PANTHER CALCIUM-TRANSPORTING ATPASE 90 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00064 Vimu-Chr9 800774 804206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00064 5 85 Primary Pumps ATPases(2) AT4G00900 67.901 1.53e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00064 K01537 - gmx:100800498 353.599